Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY17044 | Canola | endoplasmic reticulum | 96.08 | 96.08 |
| CDY17093 | Canola | endoplasmic reticulum | 91.72 | 92.12 |
| CDY06760 | Canola | endoplasmic reticulum | 91.07 | 91.47 |
| CDY17193 | Canola | endoplasmic reticulum | 59.04 | 85.22 |
| AT1G47128.1 | Thale cress | endoplasmic reticulum | 82.79 | 82.25 |
| CDX71540 | Canola | extracellular | 78.43 | 78.26 |
| CDY22370 | Canola | extracellular | 77.78 | 77.61 |
| CDY25228 | Canola | extracellular | 77.34 | 77.17 |
| CDY27951 | Canola | endoplasmic reticulum | 76.69 | 76.69 |
| VIT_18s0001g09990.t01 | Wine grape | endoplasmic reticulum | 70.59 | 69.38 |
| KXG27269 | Sorghum | endoplasmic reticulum | 68.63 | 67.89 |
| Zm00001d002065_P006 | Maize | plasma membrane | 68.63 | 67.31 |
| KRH05634 | Soybean | endoplasmic reticulum | 69.72 | 67.23 |
| Zm00001d026458_P002 | Maize | endoplasmic reticulum | 69.28 | 66.25 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 67.54 | 66.1 |
| KRH15406 | Soybean | nucleus | 71.02 | 65.73 |
| TraesCS2A01G512100.1 | Wheat | extracellular | 65.8 | 65.51 |
| TraesCS2B01G540100.2 | Wheat | golgi | 66.01 | 65.44 |
| TraesCS2D01G513600.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 66.01 | 65.44 |
| GSMUA_Achr3P01000_001 | Banana | endoplasmic reticulum | 66.67 | 65.25 |
| PGSC0003DMT400020654 | Potato | cytosol | 61.66 | 63.88 |
| KRH61341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 50.76 | 63.49 |
| Solyc12g088670.1.1 | Tomato | endoplasmic reticulum | 63.83 | 62.88 |
| HORVU2Hr1G113460.2 | Barley | plasma membrane | 66.88 | 62.78 |
| GSMUA_Achr1P15920_001 | Banana | endoplasmic reticulum | 64.27 | 62.77 |
| GSMUA_Achr4P06140_001 | Banana | endoplasmic reticulum | 64.05 | 62.69 |
| GSMUA_Achr4P12910_001 | Banana | endoplasmic reticulum | 63.62 | 61.73 |
| GSMUA_Achr8P03350_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 44.44 | 61.26 |
| Solyc04g078540.2.1 | Tomato | endoplasmic reticulum | 62.75 | 61.02 |
| CDY46179 | Canola | endoplasmic reticulum | 58.61 | 59.78 |
| CDY22445 | Canola | vacuole | 48.15 | 59.09 |
| CDX75633 | Canola | vacuole | 48.15 | 59.09 |
| CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 57.3 | 58.57 |
| CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 57.3 | 58.57 |
| CDX69285 | Canola | endoplasmic reticulum, vacuole | 47.49 | 58.29 |
| GSMUA_Achr1P09800_001 | Banana | endoplasmic reticulum | 59.48 | 57.72 |
| CDY44047 | Canola | vacuole | 47.28 | 56.51 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi | 40.96 | 54.81 |
| CDY02431 | Canola | nucleus | 53.59 | 54.79 |
| CDY50154 | Canola | endoplasmic reticulum | 52.51 | 54.77 |
| CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 52.29 | 54.55 |
| CDY39574 | Canola | cytosol, endoplasmic reticulum, nucleus | 34.64 | 54.08 |
| CDX99227 | Canola | endoplasmic reticulum | 58.39 | 52.86 |
| CDY63262 | Canola | extracellular, plasma membrane, vacuole | 28.54 | 52.82 |
| CDX75496 | Canola | endoplasmic reticulum | 40.52 | 52.25 |
| CDY37617 | Canola | endoplasmic reticulum, extracellular | 42.05 | 52.16 |
| CDY25281 | Canola | extracellular | 42.05 | 52.02 |
| CDY31861 | Canola | endoplasmic reticulum | 39.87 | 51.84 |
| CDY01351 | Canola | endoplasmic reticulum | 39.22 | 51.28 |
| CDY25283 | Canola | vacuole | 41.39 | 50.94 |
| CDY16132 | Canola | endoplasmic reticulum, extracellular, vacuole | 41.39 | 50.13 |
| CDY58055 | Canola | golgi, nucleus, plastid | 34.86 | 49.69 |
| CDY33651 | Canola | endoplasmic reticulum | 35.08 | 49.39 |
| CDX96617 | Canola | endoplasmic reticulum | 35.08 | 49.24 |
| CDX69132 | Canola | plastid | 40.52 | 48.95 |
| CDY34045 | Canola | endoplasmic reticulum | 38.34 | 48.75 |
| CDX83168 | Canola | endoplasmic reticulum | 38.34 | 48.75 |
| CDX94938 | Canola | extracellular, vacuole | 46.41 | 48.19 |
| CDY48168 | Canola | endoplasmic reticulum | 37.69 | 48.19 |
| CDX93470 | Canola | plasma membrane | 46.19 | 47.86 |
| CDX87758 | Canola | endoplasmic reticulum | 35.95 | 47.69 |
| CDY50483 | Canola | endoplasmic reticulum | 35.95 | 47.69 |
| CDX77621 | Canola | endoplasmic reticulum, extracellular | 35.51 | 47.52 |
| CDY39575 | Canola | endoplasmic reticulum | 35.95 | 44.84 |
| CDY31498 | Canola | cytosol | 27.67 | 42.47 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:A0A078J904 | UniProt:A0A078J904 | MEROPS:C01.064 |
| EnsemblPlants:CDY63586 | ProteinID:CDY63586 | ProteinID:CDY63586.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00039437001 | InterPro:Granulin | InterPro:Granulin_sf | InterPro:IPR037277 | PFAM:PF00112 | PFAM:PF00396 |
| PFAM:PF08246 | PRINTS:PR00705 | ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 |
| PANTHER:PTHR12411:SF352 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A |
| InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 | SMART:SM00277 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 |
| SUPFAM:SSF57277 | SignalP:SignalP-noTM | UniParc:UPI0004EDC246 | SEG:seg | : | : |
Description
BnaCnng42340DBnaCnng42340D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J904]
Coordinates
chrLK034323:-:11805..14236
Molecular Weight (calculated)
50665.5 Da
IEP (calculated)
5.117
GRAVY (calculated)
-0.440
Length
459 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLLNTALVI LLQTMIAVSS AIDMSIISYD KNHHTISAGS RSDAEVYKLY EEWLVKHGKV QNSLTEKDRR FEIFKDNLRF IDDHNGKNLS YRLGLTKFAD
101: LTNDEYRSMY VGSRLKRKST RTSLRYEARV GDALPESVDW RKEGAVAEVK DQGSCGSCWA FSAIGAVEGI NKIVTGDLIS LSEQELVDCD TSYNEGCNGG
201: LMDYAFEFIM NNGGIDTEED YPYKGVDGRC DQTRKNAKVV TIDSYEDVPA NSEESLKKAL SNQPISVAIE GGGRAFQLYD SGIFDGICGT DLDHGVLAVG
301: YGTENGKDYW IVKNSWGSSW GESGYIRMER NIAASAGKCG IAVEPSYPIK NGQNPPNPGP SPPSPIKPPT QCDSYYTCPQ SNTCCCLFEF GKYCLSWGCC
401: PLEAATCCDD NYSCCPHDYP VCDLDQGTCL MSKNSPFSVK ALKRKPATPF WSHGRKNIV
101: LTNDEYRSMY VGSRLKRKST RTSLRYEARV GDALPESVDW RKEGAVAEVK DQGSCGSCWA FSAIGAVEGI NKIVTGDLIS LSEQELVDCD TSYNEGCNGG
201: LMDYAFEFIM NNGGIDTEED YPYKGVDGRC DQTRKNAKVV TIDSYEDVPA NSEESLKKAL SNQPISVAIE GGGRAFQLYD SGIFDGICGT DLDHGVLAVG
301: YGTENGKDYW IVKNSWGSSW GESGYIRMER NIAASAGKCG IAVEPSYPIK NGQNPPNPGP SPPSPIKPPT QCDSYYTCPQ SNTCCCLFEF GKYCLSWGCC
401: PLEAATCCDD NYSCCPHDYP VCDLDQGTCL MSKNSPFSVK ALKRKPATPF WSHGRKNIV
001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
Arabidopsis Description
RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.