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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • extracellular 6
  • endoplasmic reticulum 7
  • vacuole 7
  • plasma membrane 5
  • golgi 5
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:secretory
BaCelLo:secretory
EpiLoc:vacuole
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Plant-mPloc:vacuole
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:endoplasmic reticulum
 endoplasmic reticulum: 29145071
extracellular: 29876421
msms PMID: 29876421 doi
L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán
Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.
msms PMID: 29145071 doi
P Ibort, H Imai, M Uemura, R Aroca
Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc05g056400.2.1
Solyc06g005940.2.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G47128.1 Solyc05g056400.2.1 AT1G21750.1 18676877
AT1G47128.1 Solyc06g005940.2.1 AT1G21750.1 18676877
AT5G43060.1 Solyc05g056400.2.1 AT1G21750.1 18676877
AT5G43060.1 Solyc06g005940.2.1 AT1G21750.1 18676877
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400020654 Potato cytosol 89.83 95.71
Solyc12g088670.1.1 Tomato endoplasmic reticulum 72.25 73.18
CDY22370 Canola extracellular 63.35 65.0
Bra033657.1-P Field mustard extracellular 63.14 64.78
CDX71540 Canola extracellular 62.71 64.35
VIT_18s0001g09990.t01 Wine grape endoplasmic reticulum 63.56 64.24
AT5G43060.1 Thale cress endoplasmic reticulum 62.08 63.28
CDY25228 Canola extracellular 61.65 63.26
CDY17093 Canola endoplasmic reticulum 61.02 63.02
AT1G47128.1 Thale cress endoplasmic reticulum 61.65 62.99
CDY06760 Canola endoplasmic reticulum 60.81 62.8
Bra040749.1-P Field mustard endoplasmic reticulum 60.81 62.8
CDY63586 Canola endoplasmic reticulum 61.02 62.75
GSMUA_Achr4P06140_001 Banana endoplasmic reticulum 62.08 62.47
CDY17044 Canola endoplasmic reticulum 60.59 62.31
KXG27269 Sorghum endoplasmic reticulum 61.02 62.07
KRH05634 Soybean endoplasmic reticulum 62.5 61.97
GSMUA_Achr3P01000_001 Banana endoplasmic reticulum 61.44 61.83
Bra014057.1-P Field mustard endoplasmic reticulum 59.75 61.44
TraesCS2A01G512100.1 Wheat extracellular 59.96 61.39
GSMUA_Achr10P... Banana endoplasmic reticulum 60.81 61.19
TraesCS2B01G540100.2 Wheat golgi 59.96 61.12
TraesCS2D01G513600.1 Wheat endoplasmic reticulum, golgi, vacuole 59.96 61.12
Zm00001d002065_P006 Maize plasma membrane 60.59 61.11
KRH61341 Soybean endoplasmic reticulum, extracellular, vacuole 47.25 60.76
CDY17193 Canola endoplasmic reticulum 40.89 60.69
Solyc02g093040.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 46.4 60.33
KRH15406 Soybean nucleus 63.35 60.28
GSMUA_Achr4P12910_001 Banana endoplasmic reticulum 60.17 60.04
Solyc01g107760.2.1 Tomato extracellular 59.75 60.0
GSMUA_Achr1P15920_001 Banana endoplasmic reticulum 59.32 59.57
Zm00001d026458_P002 Maize endoplasmic reticulum 60.17 59.17
HORVU2Hr1G113460.2 Barley plasma membrane 60.81 58.69
GSMUA_Achr8P03350_001 Banana endoplasmic reticulum, extracellular, vacuole 39.83 56.46
Solyc04g082710.2.1 Tomato cytosol 36.44 56.39
Solyc03g044230.1.1 Tomato extracellular 43.86 54.62
Solyc02g076970.1.1 Tomato extracellular 32.42 54.45
GSMUA_Achr1P09800_001 Banana endoplasmic reticulum 54.45 54.33
Solyc12g094700.1.1 Tomato extracellular 37.5 53.47
CDY27951 Canola endoplasmic reticulum 51.91 53.38
Solyc12g056000.1.1 Tomato endoplasmic reticulum 37.92 52.65
Solyc12g056010.1.1 Tomato endoplasmic reticulum 37.71 52.35
Solyc12g056020.1.1 Tomato extracellular 37.71 52.2
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, golgi 36.23 49.85
Solyc03g111730.2.1 Tomato endoplasmic reticulum 37.92 49.72
Solyc03g006200.1.1 Tomato endoplasmic reticulum, extracellular 31.78 49.34
Solyc05g013920.2.1 Tomato endoplasmic reticulum 37.08 48.88
CDY02431 Canola nucleus 43.64 45.88
Solyc02g076910.2.1 Tomato extracellular, golgi 34.11 45.87
Solyc03g006210.1.1 Tomato extracellular 30.51 41.62
Solyc02g077040.2.1 Tomato extracellular 30.3 41.45
Solyc02g076980.2.1 Tomato endoplasmic reticulum, golgi 27.97 38.26
Solyc04g080880.2.1 Tomato extracellular 41.74 23.31
Protein Annotations
Gene3D:3.10.20.500Gene3D:3.90.70.10MapMan:50.3.4MEROPS:C01.029GO:GO:0003674GO:GO:0003824
GO:GO:0004197GO:GO:0005575GO:GO:0005576GO:GO:0005615GO:GO:0005622GO:GO:0005623
GO:GO:0005737GO:GO:0005764GO:GO:0005773GO:GO:0006508GO:GO:0008150GO:GO:0008152
GO:GO:0008233GO:GO:0008234GO:GO:0009056GO:GO:0009987GO:GO:0016787GO:GO:0019538
GO:GO:0051603InterPro:GranulinInterPro:Granulin_sfInterPro:IPR037277UniProt:K4BUT9PFAM:PF00112
PFAM:PF00396PFAM:PF08246PRINTS:PR00705ScanProsite:PS00139ScanProsite:PS00639ScanProsite:PS00640
PANTHER:PTHR12411PANTHER:PTHR12411:SF523InterPro:Papain_like_cys_pep_sfInterPro:Pept_asp_ASInterPro:Pept_cys_ASInterPro:Pept_his_AS
InterPro:Peptidase_C1AInterPro:Peptidase_C1A_CInterPro:Prot_inhib_I29SMART:SM00277SMART:SM00645SMART:SM00848
SUPFAM:SSF54001SUPFAM:SSF57277SignalP:SignalP-noTMEnsemblPlantsGene:Solyc04g078540.2EnsemblPlants:Solyc04g078540.2.1TMHMM:TMhelix
UniParc:UPI0002766C19SEG:seg::::
Description
No Description!
Coordinates
chr4:-:63242932..63246659
Molecular Weight (calculated)
51341.6 Da
IEP (calculated)
5.940
GRAVY (calculated)
-0.356
Length
472 amino acids
Sequence
(BLAST)
001: MAIHLSALTI SILVMVVSSA AVTSAAAEDM SIISYNEKHH TIGAGRTDDE VMSMYESWLV EHKKVYNALG EKDKRFQIFK DNLKYIDEHN AMPEKSYKLG
101: LTKFADLTNE EYRSVYLGTK PDASRRLSSR QSDRYAPKVG DRLPESVDWV KKGVLVGVKD QGQCGSCWAF SAVAAIEAVN KIKTGDSISL SEQELVDCDT
201: SSNNGCDGGL MDYAFEFVIK NGGLDTEEDY PYTGEDGRCD LTRKNAKVVT IDGYEDVPAN DENAMKKAIA SQPVSVAIEA GGKDFQHYKS GIFTGKCGAA
301: VDHGVVAVGY GSENGMDYWI VRNSWGASWG EHGYLRMQRN IANPKGLCGI ATVVSYPVKT GQNPPKPAPS PPSPVKPPTT CDDMYSCPSG TTCCCVYEYY
401: HMCFAWGCCP MEGATCCKDH NSCCPHDYPV CNVKAGTCSI SENNPLSVKA MSHILAKPIG SFSNQGMKNT IS
Best Arabidopsis Sequence Match ( AT5G43060.1 )
(BLAST)
001: MGFLKLSPMI LLLAMIGVSY AMDMSIISYD ENHHITTETS RSDSEVERIY EAWMVEHGKK KMNQNGLGAE KDQRFEIFKD NLRFIDEHNT KNLSYKLGLT
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA
Arabidopsis Description
RD21BProbable cysteine protease RD21B [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH8]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.