Factsheet for GSMUA_Achr4P06140_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
endoplasmic reticulum 7
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P16970_001
GSMUA_Achr3P22070_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47128.1	GSMUA_Achr1P16970_001	AT1G21750.1	18676877
AT1G47128.1	GSMUA_Achr3P22070_001	AT1G21750.1	18676877
AT5G43060.1	GSMUA_Achr1P16970_001	AT1G21750.1	18676877
AT5G43060.1	GSMUA_Achr3P22070_001	AT1G21750.1	18676877

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P12910_001	Banana	endoplasmic reticulum	82.52	81.82
GSMUA_Achr1P15920_001	Banana	endoplasmic reticulum	77.19	77.02
GSMUA_Achr3P01000_001	Banana	endoplasmic reticulum	75.69	75.69
VIT_18s0001g09990.t01	Wine grape	endoplasmic reticulum	69.94	70.24
KXG27269	Sorghum	endoplasmic reticulum	69.08	69.83
Zm00001d002065_P006	Maize	plasma membrane	69.08	69.23
GSMUA_Achr10P...	Banana	endoplasmic reticulum	69.08	69.08
TraesCS2A01G512100.1	Wheat	extracellular	67.59	68.76
TraesCS2D01G513600.1	Wheat	endoplasmic reticulum, golgi, vacuole	67.8	68.68
TraesCS2B01G540100.2	Wheat	golgi	67.8	68.68
GSMUA_Achr1P09800_001	Banana	endoplasmic reticulum	68.87	68.29
CDX71540	Canola	extracellular	66.31	67.61
GSMUA_Achr8P03350_001	Banana	endoplasmic reticulum, extracellular, vacuole	47.97	67.57
CDY22370	Canola	extracellular	66.1	67.39
Bra033657.1-P	Field mustard	extracellular	66.1	67.39
Zm00001d026458_P002	Maize	endoplasmic reticulum	68.87	67.29
AT5G43060.1	Thale cress	endoplasmic reticulum	66.31	67.17
KRH05634	Soybean	endoplasmic reticulum	67.38	66.39
CDY25228	Canola	extracellular	64.61	65.87
HORVU2Hr1G113460.2	Barley	plasma membrane	68.66	65.85
AT1G47128.1	Thale cress	endoplasmic reticulum	63.75	64.72
PGSC0003DMT400020654	Potato	cytosol	60.77	64.33
CDY17093	Canola	endoplasmic reticulum	62.69	64.33
Bra040749.1-P	Field mustard	endoplasmic reticulum	62.47	64.11
Bra014057.1-P	Field mustard	endoplasmic reticulum	62.69	64.05
CDY63586	Canola	endoplasmic reticulum	62.69	64.05
CDY06760	Canola	endoplasmic reticulum	62.26	63.9
CDY17044	Canola	endoplasmic reticulum	62.47	63.83
KRH15406	Soybean	nucleus	66.95	63.31
CDY17193	Canola	endoplasmic reticulum	42.64	62.89
Solyc04g078540.2.1	Tomato	endoplasmic reticulum	62.47	62.08
Solyc12g088670.1.1	Tomato	endoplasmic reticulum	61.41	61.8
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi	44.99	61.52
KRH61341	Soybean	endoplasmic reticulum, extracellular, vacuole	46.7	59.67
CDY27951	Canola	endoplasmic reticulum	53.94	55.12
GSMUA_Achr2P04950_001	Banana	endoplasmic reticulum, golgi	39.02	52.44
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	39.87	52.09
GSMUA_Achr3P03740_001	Banana	endoplasmic reticulum	37.31	49.58
GSMUA_Achr10P...	Banana	endoplasmic reticulum	37.31	49.16
CDY02431	Canola	nucleus	45.84	47.88
GSMUA_Achr6P13620_001	Banana	extracellular, vacuole	32.41	45.78
GSMUA_Achr4P17710_001	Banana	endoplasmic reticulum, extracellular	42.86	45.68
GSMUA_Achr3P11680_001	Banana	endoplasmic reticulum, vacuole	37.1	44.5

Protein Annotations

Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	GO:GO:0003674	GO:GO:0003824	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr4G06140_001	EnsemblPlants:GSMUA_Achr4P06140_001	EnsemblPlants:GSMUA_Achr4T06140_001	InterPro:Granulin	InterPro:Granulin_sf	InterPro:IPR037277
UniProt:M0SLI1	PFAM:PF00112	PFAM:PF00396	PFAM:PF08246	PRINTS:PR00705	ScanProsite:PS00139
ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF352	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS
InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	SMART:SM00277
SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SUPFAM:SSF57277	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI000294F553	SEG:seg	:	:	:	:

Description

Oryzain alpha chain [Source:GMGC_GENE;Acc:GSMUA_Achr4G06140_001]

Coordinates

chr4:-:4675360..4678812

Molecular Weight (calculated)

51214.7 Da

IEP (calculated)

4.768

GRAVY (calculated)

-0.439

Length

469 amino acids

Sequence
(BLAST)

001: MGTVPMASLA VFLLLGLAAA FAAPDMSIIS YDEEHGARGL ERSEEEVRRM YDAWVAEHGR VHNALGEREQ RFEVFKDNLR FIDAHNADAE AYGFSLGLNR
101: FADLTNEEYR ATYLGTRAGG TARRLRAPSD RYRHEAGDEL PESVDWREKG AVAAVKDQGS CGSCWAFSTI AAVEGVNKIV TGDLVTLSEQ ELVDCDSAYN
201: QGCNGGLMDY AFEFIIGNGG VDTEDDYPYK ARDGKCDQHR KLAKVVVIDG YEDVPANDEK ALQKAVANQP VSVAIEAGGR EFQLYKSGVF TGRCGTKLDH
301: GVVVVGYGTE NGKDYWIVRN SWSSDWGEAG YIRMERNLNT STGKCGIAIE PSYPTKKGQN PPNPGPSPPS PVSPPITCDK YFSCPSSTTC CCVYEYGSHC
401: FAWGCCPVEG ATCCEDHRSC CPPDFPVCNA QAGTCQLSKD NPLGVKALDR IPAKPHWAYS DDESKKIEI

Best Arabidopsis Sequence Match ( AT5G43060.1 )
(BLAST)

001: MGFLKLSPMI LLLAMIGVSY AMDMSIISYD ENHHITTETS RSDSEVERIY EAWMVEHGKK KMNQNGLGAE KDQRFEIFKD NLRFIDEHNT KNLSYKLGLT
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA

Arabidopsis Description

RD21BProbable cysteine protease RD21B [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.