Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 7
- vacuole 7
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G47128.1 | KXG26345 | AT1G21750.1 | 18676877 |
| AT1G47128.1 | KXG28001 | AT1G21750.1 | 18676877 |
| AT5G43060.1 | KXG26345 | AT1G21750.1 | 18676877 |
| AT5G43060.1 | KXG28001 | AT1G21750.1 | 18676877 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d002065_P006 | Maize | plasma membrane | 92.46 | 91.67 |
| Zm00001d026458_P002 | Maize | endoplasmic reticulum | 90.09 | 87.08 |
| TraesCS2D01G513600.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 84.27 | 84.45 |
| TraesCS2B01G540100.2 | Wheat | golgi | 84.27 | 84.45 |
| TraesCS2A01G512100.1 | Wheat | extracellular | 83.62 | 84.16 |
| HORVU2Hr1G113460.2 | Barley | plasma membrane | 84.05 | 79.75 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 74.57 | 73.77 |
| VIT_18s0001g09990.t01 | Wine grape | endoplasmic reticulum | 71.55 | 71.09 |
| GSMUA_Achr3P01000_001 | Banana | endoplasmic reticulum | 71.34 | 70.58 |
| Bra040749.1-P | Field mustard | endoplasmic reticulum | 68.53 | 69.58 |
| GSMUA_Achr1P15920_001 | Banana | endoplasmic reticulum | 70.47 | 69.57 |
| CDY06760 | Canola | endoplasmic reticulum | 68.32 | 69.37 |
| GSMUA_Achr4P12910_001 | Banana | endoplasmic reticulum | 70.69 | 69.34 |
| CDY17093 | Canola | endoplasmic reticulum | 68.1 | 69.15 |
| GSMUA_Achr4P06140_001 | Banana | endoplasmic reticulum | 69.83 | 69.08 |
| CDY63586 | Canola | endoplasmic reticulum | 67.89 | 68.63 |
| GSMUA_Achr8P03350_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 49.14 | 68.47 |
| CDY17044 | Canola | endoplasmic reticulum | 67.67 | 68.41 |
| Bra014057.1-P | Field mustard | endoplasmic reticulum | 67.67 | 68.41 |
| AT1G47128.1 | Thale cress | endoplasmic reticulum | 68.1 | 68.4 |
| CDY22370 | Canola | extracellular | 66.81 | 67.39 |
| CDX71540 | Canola | extracellular | 66.81 | 67.39 |
| AT5G43060.1 | Thale cress | endoplasmic reticulum | 67.24 | 67.39 |
| Bra033657.1-P | Field mustard | extracellular | 66.59 | 67.17 |
| CDY25228 | Canola | extracellular | 65.52 | 66.09 |
| KRH05634 | Soybean | endoplasmic reticulum | 67.24 | 65.55 |
| Solyc12g088670.1.1 | Tomato | endoplasmic reticulum | 63.36 | 63.09 |
| KRH15406 | Soybean | nucleus | 67.24 | 62.9 |
| CDY17193 | Canola | endoplasmic reticulum | 42.89 | 62.58 |
| PGSC0003DMT400020654 | Potato | cytosol | 59.48 | 62.3 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi | 45.47 | 61.52 |
| GSMUA_Achr1P09800_001 | Banana | endoplasmic reticulum | 62.5 | 61.31 |
| Solyc04g078540.2.1 | Tomato | endoplasmic reticulum | 62.07 | 61.02 |
| EES13064 | Sorghum | extracellular, plasma membrane, vacuole | 60.78 | 60.39 |
| KRH61341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 46.98 | 59.4 |
| CDY27951 | Canola | endoplasmic reticulum | 57.11 | 57.73 |
| KXG20680 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 43.75 | 56.7 |
| EER88857 | Sorghum | endoplasmic reticulum | 44.18 | 55.11 |
| KXG19778 | Sorghum | cytosol, nucleus, plastid | 35.56 | 53.57 |
| EES11628 | Sorghum | extracellular | 53.45 | 52.65 |
| EES09937 | Sorghum | endoplasmic reticulum | 41.59 | 52.02 |
| KXG19775 | Sorghum | extracellular | 37.93 | 51.76 |
| EES10550 | Sorghum | extracellular | 37.93 | 51.76 |
| EER88858 | Sorghum | golgi, vacuole | 43.75 | 51.13 |
| KXG19777 | Sorghum | extracellular | 37.28 | 50.88 |
| EER89590 | Sorghum | extracellular | 37.28 | 50.88 |
| OQU81187 | Sorghum | endoplasmic reticulum, extracellular | 37.93 | 50.72 |
| EES15197 | Sorghum | endoplasmic reticulum | 40.3 | 50.27 |
| EES02142 | Sorghum | vacuole | 40.95 | 50.26 |
| CDY02431 | Canola | nucleus | 48.49 | 50.11 |
| EES01927 | Sorghum | extracellular | 39.66 | 49.86 |
| KXG21060 | Sorghum | endoplasmic reticulum, golgi, vacuole | 39.66 | 49.6 |
| KXG25863 | Sorghum | endoplasmic reticulum | 35.56 | 48.96 |
| KXG25862 | Sorghum | endoplasmic reticulum | 35.56 | 48.96 |
| KXG25861 | Sorghum | endoplasmic reticulum | 35.56 | 48.96 |
| EER93437 | Sorghum | endoplasmic reticulum | 37.07 | 48.73 |
| EER90747 | Sorghum | endoplasmic reticulum | 39.66 | 48.29 |
| EES10463 | Sorghum | endoplasmic reticulum | 35.13 | 48.22 |
| OQU81188 | Sorghum | cytosol, nucleus, plastid | 28.66 | 48.19 |
| EES10461 | Sorghum | endoplasmic reticulum | 34.91 | 47.93 |
| EES07368 | Sorghum | extracellular | 35.99 | 46.91 |
| EES18460 | Sorghum | endoplasmic reticulum | 45.47 | 45.67 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | UniProt:A0A1B6PNL9 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008234 | GO:GO:0016787 |
| GO:GO:0019538 | InterPro:Granulin | InterPro:Granulin_sf | InterPro:IPR037277 | EnsemblPlants:KXG27269 | ProteinID:KXG27269 |
| ProteinID:KXG27269.1 | PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 | ScanProsite:PS00139 |
| ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF352 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS |
| InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 | SMART:SM00277 |
| SMART:SM00645 | SMART:SM00848 | EnsemblPlantsGene:SORBI_3006G242000 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI0001C8064A | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr6:-:58267539..58271445
Molecular Weight (calculated)
50387.4 Da
IEP (calculated)
4.668
GRAVY (calculated)
-0.463
Length
464 amino acids
Sequence
(BLAST)
(BLAST)
001: MGASTTTSLA AAAAALLLLV SLAAAADMSI ISYGERSEEE TRRMYAEWMA THGRTYNAIG EEERRYQVFR DNLRIIDEHN AAADAGVHSF RLGLNRFADL
101: TNEEYRATYL GVRTKPQRER KLSARYHADD NEDLPESVDW RTKGAVAEVK DQGSCGSCWA FSTIAAVEGI NQIVTGDLIS LSEQELVDCD TSYNQGCNGG
201: LMDYAFEFII NNGGIDTESD YPYKGTDGRC DANKKNAKVV TIDSYEDVPA NSEKSLQKAV ANQPVSVAIE AGGNAFQLYS SGIFTGKCGT ALDHGVTAVG
301: YGTENGKDYW IVKNSWGSSW GESGYIRMER NIKDSSGKCG IAVEPSYPLK EGANPPNPGP TPPSPTPEPS VCDNYYSCPE STTCCCIYEY GKYCFAWGCC
401: PLEGATCCDD HYSCCPHDYP ICNVQQGTCL MGKDSPLSVK ATKRTLAKPH WAFSGNTDGM KSSA
101: TNEEYRATYL GVRTKPQRER KLSARYHADD NEDLPESVDW RTKGAVAEVK DQGSCGSCWA FSTIAAVEGI NQIVTGDLIS LSEQELVDCD TSYNQGCNGG
201: LMDYAFEFII NNGGIDTESD YPYKGTDGRC DANKKNAKVV TIDSYEDVPA NSEKSLQKAV ANQPVSVAIE AGGNAFQLYS SGIFTGKCGT ALDHGVTAVG
301: YGTENGKDYW IVKNSWGSSW GESGYIRMER NIKDSSGKCG IAVEPSYPLK EGANPPNPGP TPPSPTPEPS VCDNYYSCPE STTCCCIYEY GKYCFAWGCC
401: PLEGATCCDD HYSCCPHDYP ICNVQQGTCL MGKDSPLSVK ATKRTLAKPH WAFSGNTDGM KSSA
001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
Arabidopsis Description
RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.