Factsheet for Solyc12g088670.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 7
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc05g056400.2.1
Solyc06g005940.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47128.1	Solyc05g056400.2.1	AT1G21750.1	18676877
AT1G47128.1	Solyc06g005940.2.1	AT1G21750.1	18676877
AT5G43060.1	Solyc05g056400.2.1	AT1G21750.1	18676877
AT5G43060.1	Solyc06g005940.2.1	AT1G21750.1	18676877

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g078540.2.1	Tomato	endoplasmic reticulum	73.18	72.25
VIT_18s0001g09990.t01	Wine grape	endoplasmic reticulum	67.17	67.02
AT1G47128.1	Thale cress	endoplasmic reticulum	64.38	64.94
Bra033657.1-P	Field mustard	extracellular	63.09	63.91
CDX71540	Canola	extracellular	63.09	63.91
CDY22370	Canola	extracellular	63.09	63.91
CDY63586	Canola	endoplasmic reticulum	62.88	63.83
Bra040749.1-P	Field mustard	endoplasmic reticulum	62.45	63.68
CDY17093	Canola	endoplasmic reticulum	62.45	63.68
KRH05634	Soybean	endoplasmic reticulum	65.02	63.66
CDY17044	Canola	endoplasmic reticulum	62.66	63.62
CDY06760	Canola	endoplasmic reticulum	62.23	63.46
KXG27269	Sorghum	endoplasmic reticulum	63.09	63.36
TraesCS2A01G512100.1	Wheat	extracellular	62.45	63.12
AT5G43060.1	Thale cress	endoplasmic reticulum	62.66	63.07
CDY25228	Canola	extracellular	62.23	63.04
Bra014057.1-P	Field mustard	endoplasmic reticulum	62.02	62.96
TraesCS2B01G540100.2	Wheat	golgi	62.45	62.85
TraesCS2D01G513600.1	Wheat	endoplasmic reticulum, golgi, vacuole	62.45	62.85
GSMUA_Achr3P01000_001	Banana	endoplasmic reticulum	63.09	62.69
Solyc01g107760.2.1	Tomato	extracellular	63.09	62.55
GSMUA_Achr10P...	Banana	endoplasmic reticulum	62.88	62.47
Zm00001d002065_P006	Maize	plasma membrane	62.66	62.39
KRH15406	Soybean	nucleus	65.67	61.69
GSMUA_Achr4P06140_001	Banana	endoplasmic reticulum	61.8	61.41
CDY17193	Canola	endoplasmic reticulum	41.63	61.01
Solyc02g093040.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	47.21	60.61
GSMUA_Achr1P15920_001	Banana	endoplasmic reticulum	60.73	60.21
HORVU2Hr1G113460.2	Barley	plasma membrane	63.09	60.12
GSMUA_Achr4P12910_001	Banana	endoplasmic reticulum	60.73	59.83
Zm00001d026458_P002	Maize	endoplasmic reticulum	61.59	59.79
GSMUA_Achr8P03350_001	Banana	endoplasmic reticulum, extracellular, vacuole	42.7	59.76
KRH61341	Soybean	endoplasmic reticulum, extracellular, vacuole	45.92	58.31
Solyc03g044230.1.1	Tomato	extracellular	45.49	55.94
GSMUA_Achr1P09800_001	Banana	endoplasmic reticulum	56.01	55.18
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi	39.27	53.35
Solyc04g082710.2.1	Tomato	cytosol	34.33	52.46
CDY27951	Canola	endoplasmic reticulum	51.5	52.29
Solyc12g094700.1.1	Tomato	extracellular	36.91	51.96
Solyc02g076970.1.1	Tomato	extracellular	30.69	50.89
Solyc12g056020.1.1	Tomato	extracellular	37.12	50.73
Solyc12g056000.1.1	Tomato	endoplasmic reticulum	36.91	50.59
Solyc12g056010.1.1	Tomato	endoplasmic reticulum	36.7	50.29
Solyc03g111730.2.1	Tomato	endoplasmic reticulum	38.41	49.72
Solyc03g006200.1.1	Tomato	endoplasmic reticulum, extracellular	31.55	48.36
Solyc05g013920.2.1	Tomato	endoplasmic reticulum	37.12	48.32
CDY02431	Canola	nucleus	45.06	46.77
Solyc02g076910.2.1	Tomato	extracellular, golgi	34.55	45.87
Solyc03g006210.1.1	Tomato	extracellular	31.33	42.2
Solyc02g077040.2.1	Tomato	extracellular	30.9	41.74
Solyc02g076980.2.1	Tomato	endoplasmic reticulum, golgi	30.04	40.58
Solyc04g080880.2.1	Tomato	extracellular	43.78	24.14

Protein Annotations

Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	EMBL:AF172856	EMBL:AJ003137	GO:GO:0003674
GO:GO:0003824	GO:GO:0004197	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005764	GO:GO:0005773	GO:GO:0006508	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0051603	InterPro:Granulin	InterPro:Granulin_sf	InterPro:IPR037277	EMBL:LN736308
UniProt:O49877	PFAM:PF00112	PFAM:PF00396	PFAM:PF08246	PRINTS:PR00705	ScanProsite:PS00139
ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF523	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS
InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	SMART:SM00277
SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SUPFAM:SSF57277	SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc12g088670.1
EnsemblPlants:Solyc12g088670.1.1	UniParc:UPI00000A58EA	SEG:seg	:	:	:

Description

CYP1 [Source:UniProtKB/TrEMBL;Acc:O49877]

Coordinates

chr12:-:63949590..63953361

Molecular Weight (calculated)

51144.2 Da

IEP (calculated)

6.243

GRAVY (calculated)

-0.425

Length

466 amino acids

Sequence
(BLAST)

001: MAAHSSTLTI SILLMLIFST LSSASDMSII SYDETHIHRR TDDEVSALYE SWLIEHGKSY NALGEKDKRF QIFKDNLRYI DEQNSVPNQS YKLGLTKFAD
101: LTNEEYRSIY LGTKSSGDRK KLSKNKSDRY LPKVGDSLPE SIDWREKGVL VGVKDQGSCG SCWAFSAVAA MESINAIVTG NLISLSEQEL VDCDRSYNEG
201: CDGGLMDYAF EFVIKNGGID TEEDYPYKER NGVCDQYRKN AKVVKIDSYE DVPVNNEKAL QKAVAHQPVS IALEAGGRDF QHYKSGIFTG KCGTAVDHGV
301: VIAGYGTENG MDYWIVRNSW GANWGENGYL RVQRNVASSS GLCGLAIEPS YPVKTGPNPP KPAPSPPSPV KPPTECDEYS QCAVGTTCCC ILQFRRSCFS
401: WGCCPLEGAT CCEDHYSCCP HDYPICNVRQ GTCSMSKGNP LGVKAMKRIL AQPIGAFGNG GKKSSS

Best Arabidopsis Sequence Match ( AT1G47128.1 )
(BLAST)

001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA

Arabidopsis Description

RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.