Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 7
- vacuole 7
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr1P16970_001 | |
| GSMUA_Achr3P22070_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P03350_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 58.85 | 82.88 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi | 55.01 | 75.22 |
| Zm00001d002065_P006 | Maize | plasma membrane | 74.41 | 74.57 |
| KXG27269 | Sorghum | endoplasmic reticulum | 73.77 | 74.57 |
| TraesCS2B01G540100.2 | Wheat | golgi | 71.43 | 72.35 |
| TraesCS2A01G512100.1 | Wheat | extracellular | 71.0 | 72.23 |
| TraesCS2D01G513600.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 71.22 | 72.14 |
| VIT_18s0001g09990.t01 | Wine grape | endoplasmic reticulum | 71.22 | 71.52 |
| Zm00001d026458_P002 | Maize | endoplasmic reticulum | 72.92 | 71.25 |
| GSMUA_Achr1P15920_001 | Banana | endoplasmic reticulum | 70.79 | 70.64 |
| GSMUA_Achr3P01000_001 | Banana | endoplasmic reticulum | 69.51 | 69.51 |
| GSMUA_Achr4P06140_001 | Banana | endoplasmic reticulum | 69.08 | 69.08 |
| HORVU2Hr1G113460.2 | Barley | plasma membrane | 71.43 | 68.51 |
| CDY17093 | Canola | endoplasmic reticulum | 66.52 | 68.27 |
| Bra040749.1-P | Field mustard | endoplasmic reticulum | 66.52 | 68.27 |
| GSMUA_Achr4P12910_001 | Banana | endoplasmic reticulum | 68.66 | 68.08 |
| CDY06760 | Canola | endoplasmic reticulum | 66.31 | 68.05 |
| Bra014057.1-P | Field mustard | endoplasmic reticulum | 66.52 | 67.97 |
| CDY17044 | Canola | endoplasmic reticulum | 66.52 | 67.97 |
| CDY63586 | Canola | endoplasmic reticulum | 66.1 | 67.54 |
| AT1G47128.1 | Thale cress | endoplasmic reticulum | 66.52 | 67.53 |
| CDX71540 | Canola | extracellular | 66.1 | 67.39 |
| Bra033657.1-P | Field mustard | extracellular | 65.88 | 67.17 |
| CDY22370 | Canola | extracellular | 65.88 | 67.17 |
| AT5G43060.1 | Thale cress | endoplasmic reticulum | 66.1 | 66.95 |
| CDY25228 | Canola | extracellular | 65.25 | 66.52 |
| KRH05634 | Soybean | endoplasmic reticulum | 65.25 | 64.29 |
| GSMUA_Achr1P09800_001 | Banana | endoplasmic reticulum | 63.75 | 63.21 |
| Solyc12g088670.1.1 | Tomato | endoplasmic reticulum | 62.47 | 62.88 |
| PGSC0003DMT400020654 | Potato | cytosol | 59.28 | 62.75 |
| KRH15406 | Soybean | nucleus | 65.88 | 62.3 |
| Solyc04g078540.2.1 | Tomato | endoplasmic reticulum | 61.19 | 60.81 |
| CDY17193 | Canola | endoplasmic reticulum | 40.09 | 59.12 |
| KRH61341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 44.99 | 57.49 |
| CDY27951 | Canola | endoplasmic reticulum | 54.8 | 55.99 |
| GSMUA_Achr2P04950_001 | Banana | endoplasmic reticulum, golgi | 40.94 | 55.01 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 40.72 | 53.2 |
| GSMUA_Achr3P03740_001 | Banana | endoplasmic reticulum | 39.45 | 52.41 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 37.95 | 50.0 |
| GSMUA_Achr3P11680_001 | Banana | endoplasmic reticulum, vacuole | 39.87 | 47.83 |
| CDY02431 | Canola | nucleus | 45.63 | 47.66 |
| GSMUA_Achr4P17710_001 | Banana | endoplasmic reticulum, extracellular | 44.14 | 47.05 |
| GSMUA_Achr6P13620_001 | Banana | extracellular, vacuole | 32.62 | 46.08 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 |
| EnsemblPlantsGene:GSMUA_Achr10G08970_001 | EnsemblPlants:GSMUA_Achr10P08970_001 | EnsemblPlants:GSMUA_Achr10T08970_001 | InterPro:Granulin | InterPro:Granulin_sf | InterPro:IPR037277 |
| UniProt:M0RGM3 | PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 | ScanProsite:PS00139 |
| ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF352 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS |
| InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 | SMART:SM00277 |
| SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-noTM | TMHMM:TMhelix |
| UniParc:UPI000295FBB3 | SEG:seg | : | : | : | : |
Description
Oryzain alpha chain [Source:GMGC_GENE;Acc:GSMUA_Achr10G08970_001]
Coordinates
chr10:+:18991982..18995227
Molecular Weight (calculated)
51245.1 Da
IEP (calculated)
4.597
GRAVY (calculated)
-0.509
Length
469 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAVILLLL LLASAAAASD LYIVTGGEGN GAQAFGRSDE EVRLLYQEWV AKHRPSRNAL ENGESRFEVF KDNLRYVDEH NAAADRGEHA FRLGLNRFAD
101: LTNEEYRAKF LGLRASASSR RRRASSAGSD RYRLRAGDDL PDSVDWREKG AVVGVKDQGS CGSCWAFSTI AAVEGINQIV TGDLISLSEQ ELVDCDTSYD
201: QGCNGGLMDY AFEFIINNGG IDSEKDYPYK ARDGRCDTYR KNAHVVTIDS YEDVPVDDEK SLQKAVANQP VSVAIEAAGR AFQFYDSGIF TGSCGTDLDH
301: GVTAVGYGSE NGKDYWIVKN SWGEDWGEDG YIRMERNIAS STGKCGIAME ASYPIKEGQN PPNPGPSPPS PVKPPTVCDD YYTCEESTTC CCVYEYGKYC
401: FAWGCCPLED ATCCEDHYSC CPHDYPICNV QEGTCLQSKN SPLSVKASKR TPAKPYWANS GSEGKKSSA
101: LTNEEYRAKF LGLRASASSR RRRASSAGSD RYRLRAGDDL PDSVDWREKG AVVGVKDQGS CGSCWAFSTI AAVEGINQIV TGDLISLSEQ ELVDCDTSYD
201: QGCNGGLMDY AFEFIINNGG IDSEKDYPYK ARDGRCDTYR KNAHVVTIDS YEDVPVDDEK SLQKAVANQP VSVAIEAAGR AFQFYDSGIF TGSCGTDLDH
301: GVTAVGYGSE NGKDYWIVKN SWGEDWGEDG YIRMERNIAS STGKCGIAME ASYPIKEGQN PPNPGPSPPS PVKPPTVCDD YYTCEESTTC CCVYEYGKYC
401: FAWGCCPLED ATCCEDHYSC CPHDYPICNV QEGTCLQSKN SPLSVKASKR TPAKPYWANS GSEGKKSSA
001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
Arabidopsis Description
RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.