Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- plasma membrane 5
- endoplasmic reticulum 7
- vacuole 7
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra012293.1-P | |
| Bra016405.1-P | |
| Bra017948.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G47128.1 | Bra012293.1-P | AT1G21750.1 | 18676877 |
| AT1G47128.1 | Bra016405.1-P | AT1G21750.1 | 18676877 |
| AT1G47128.1 | Bra017948.1-P | AT1G21750.1 | 18676877 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06760 | Canola | endoplasmic reticulum | 99.56 | 99.56 |
| Bra014057.1-P | Field mustard | endoplasmic reticulum | 90.37 | 89.98 |
| AT1G47128.1 | Thale cress | endoplasmic reticulum | 84.25 | 83.33 |
| Bra033657.1-P | Field mustard | extracellular | 79.87 | 79.35 |
| VIT_18s0001g09990.t01 | Wine grape | endoplasmic reticulum | 70.46 | 68.95 |
| KXG27269 | Sorghum | endoplasmic reticulum | 69.58 | 68.53 |
| Zm00001d002065_P006 | Maize | plasma membrane | 68.71 | 67.09 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 68.27 | 66.52 |
| Zm00001d026458_P002 | Maize | endoplasmic reticulum | 69.58 | 66.25 |
| TraesCS2A01G512100.1 | Wheat | extracellular | 65.86 | 65.29 |
| TraesCS2D01G513600.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 66.08 | 65.23 |
| TraesCS2B01G540100.2 | Wheat | golgi | 66.08 | 65.23 |
| KRH05634 | Soybean | endoplasmic reticulum | 67.18 | 64.5 |
| GSMUA_Achr3P01000_001 | Banana | endoplasmic reticulum | 65.86 | 64.18 |
| PGSC0003DMT400020654 | Potato | cytosol | 61.71 | 63.66 |
| KRH15406 | Soybean | nucleus | 68.93 | 63.51 |
| GSMUA_Achr1P15920_001 | Banana | endoplasmic reticulum | 64.55 | 62.77 |
| GSMUA_Achr4P06140_001 | Banana | endoplasmic reticulum | 64.11 | 62.47 |
| Solyc12g088670.1.1 | Tomato | endoplasmic reticulum | 63.68 | 62.45 |
| KRH61341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 50.11 | 62.4 |
| HORVU2Hr1G113460.2 | Barley | plasma membrane | 66.52 | 62.17 |
| GSMUA_Achr4P12910_001 | Banana | endoplasmic reticulum | 63.9 | 61.73 |
| GSMUA_Achr8P03350_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 44.64 | 61.26 |
| Solyc04g078540.2.1 | Tomato | endoplasmic reticulum | 62.8 | 60.81 |
| Bra011746.1-P | Field mustard | vacuole | 49.02 | 59.89 |
| Bra022418.1-P | Field mustard | endoplasmic reticulum | 58.86 | 59.78 |
| Bra010592.1-P | Field mustard | extracellular, golgi, vacuole | 48.8 | 59.63 |
| Bra013705.1-P | Field mustard | extracellular | 42.45 | 59.15 |
| GSMUA_Achr1P09800_001 | Banana | endoplasmic reticulum | 59.08 | 57.08 |
| Bra038206.1-P | Field mustard | extracellular, plasma membrane, vacuole | 55.36 | 56.22 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi | 41.36 | 55.1 |
| Bra038208.1-P | Field mustard | endoplasmic reticulum | 52.52 | 54.42 |
| Bra011608.1-P | Field mustard | endoplasmic reticulum | 41.36 | 53.09 |
| Bra012252.1-P | Field mustard | endoplasmic reticulum | 40.7 | 52.84 |
| Bra033148.1-P | Field mustard | extracellular | 42.45 | 52.29 |
| Bra016447.1-P | Field mustard | endoplasmic reticulum, golgi, vacuole | 40.92 | 52.23 |
| Bra033146.1-P | Field mustard | vacuole | 42.45 | 52.01 |
| Bra024736.1-P | Field mustard | endoplasmic reticulum, extracellular | 42.01 | 51.61 |
| Bra000615.1-P | Field mustard | endoplasmic reticulum | 39.61 | 50.14 |
| Bra018067.1-P | Field mustard | endoplasmic reticulum | 38.29 | 48.75 |
| Bra019982.1-P | Field mustard | extracellular, golgi | 46.61 | 48.08 |
| Bra025046.1-P | Field mustard | endoplasmic reticulum, extracellular | 35.23 | 46.8 |
| Bra021998.1-P | Field mustard | endoplasmic reticulum | 35.23 | 46.53 |
| Bra018066.1-P | Field mustard | endoplasmic reticulum | 36.54 | 45.38 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | EnsemblPlantsGene:Bra040749 | EnsemblPlants:Bra040749.1 | EnsemblPlants:Bra040749.1-P |
| MEROPS:C01.064 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | InterPro:Granulin | InterPro:Granulin_sf |
| InterPro:IPR037277 | UniProt:M4FI20 | PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 |
| ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF352 | InterPro:Papain_like_cys_pep_sf |
| InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 |
| SMART:SM00277 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI000253E86B | SEG:seg | : | : | : |
Description
AT1G47128 (E=1e-226) RD21, RD21A | RD21 (responsive to dehydration 21); cysteine-type endopeptidase/ cysteine-type peptidase
Coordinates
chrScaffold000249:-:15497..17743
Molecular Weight (calculated)
50513.3 Da
IEP (calculated)
5.035
GRAVY (calculated)
-0.440
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLLNSATVI LFLAMIVVSS AMDMSIISYD KNHHTVSSRS DVEVSRLYEE WVVKHGKAQN SLTEKDRRFE IFKDNLRFID EHNGKNLSYR LGLTKFADLT
101: NDEYRSMYLG SRLKRKATKT SLRYEARVGD AIPESVDWRK EGAVAEVKDQ GSCGSCWAFS TIGAVEGINK IVTGDLISLS EQELVDCDTS YNEGCNGGLM
201: DYAFEFIIKN GGIDTEEDYP YKGVDGRCDQ TRKNAKVVTI DSYEDVPANS EESLKKALSH QPISVAIEGG GRAFQLYDSG IFDGICGTDL DHGVVAVGYG
301: TENGKDYWIV KNSWGTSWGE SGYIRMERNI ASSAGKCGIA VEPSYPIKNG QNPPNPGPSP PSPVTPPTQC DSYYTCPESN TCCCLFDYGK YCLAWGCCPL
401: EAATCCDDNY SCCPHEYPVC DLDQGTCLMN KNSPFSIKAI KRKPATPFWS QSRKNIA
101: NDEYRSMYLG SRLKRKATKT SLRYEARVGD AIPESVDWRK EGAVAEVKDQ GSCGSCWAFS TIGAVEGINK IVTGDLISLS EQELVDCDTS YNEGCNGGLM
201: DYAFEFIIKN GGIDTEEDYP YKGVDGRCDQ TRKNAKVVTI DSYEDVPANS EESLKKALSH QPISVAIEGG GRAFQLYDSG IFDGICGTDL DHGVVAVGYG
301: TENGKDYWIV KNSWGTSWGE SGYIRMERNI ASSAGKCGIA VEPSYPIKNG QNPPNPGPSP PSPVTPPTQC DSYYTCPESN TCCCLFDYGK YCLAWGCCPL
401: EAATCCDDNY SCCPHEYPVC DLDQGTCLMN KNSPFSIKAI KRKPATPFWS QSRKNIA
001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
Arabidopsis Description
RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.