Factsheet for Bra038208.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 7
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012293.1-P
Bra014057.1-P
Bra016405.1-P
Bra017948.1-P
Bra040749.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19390.1	Bra012293.1-P	AT1G21750.1	18676877
AT3G19390.1	Bra016405.1-P	AT1G21750.1	18676877
AT3G19390.1	Bra017948.1-P	AT1G21750.1	18676877
AT3G19390.1	Bra014057.1-P	AT1G47128.1	26016527
AT3G19390.1	Bra040749.1-P	AT1G47128.1	26016527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50154	Canola	endoplasmic reticulum	98.87	99.09
Bra022418.1-P	Field mustard	endoplasmic reticulum	79.37	77.78
Bra038206.1-P	Field mustard	extracellular, plasma membrane, vacuole	79.14	77.56
AT3G19390.1	Thale cress	endoplasmic reticulum	72.56	70.8
TraesCS2D01G547600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	45.8	54.89
Bra040749.1-P	Field mustard	endoplasmic reticulum	54.42	52.52
Bra033657.1-P	Field mustard	extracellular	54.65	52.39
Bra014057.1-P	Field mustard	endoplasmic reticulum	53.97	51.85
Bra010592.1-P	Field mustard	extracellular, golgi, vacuole	43.08	50.8
Zm00001d001900_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	53.29	50.54
Bra011746.1-P	Field mustard	vacuole	42.86	50.53
TraesCS2A01G545700.1	Wheat	unclear	53.74	50.21
TraesCS2D01G546600.1	Wheat	plasma membrane, vacuole	53.97	50.11
TraesCS7D01G265100.1	Wheat	cytosol, nucleus, plastid	29.25	50.0
Bra013705.1-P	Field mustard	extracellular	37.19	50.0
Zm00001d026577_P001	Maize	extracellular, golgi, plasma membrane	53.29	50.0
TraesCS2B01G576300.1	Wheat	unclear	52.83	49.68
TraesCS2B01G577300.1	Wheat	extracellular, golgi	52.61	49.47
TraesCS2B01G577500.1	Wheat	endoplasmic reticulum	52.15	49.15
EES13064	Sorghum	extracellular, plasma membrane, vacuole	51.93	49.04
TraesCS2D01G547800.1	Wheat	endoplasmic reticulum, extracellular	51.25	48.29
Os04t0670200-02	Rice	extracellular	53.74	48.17
TraesCS7B01G162200.1	Wheat	endoplasmic reticulum	50.34	48.16
Bra012252.1-P	Field mustard	endoplasmic reticulum	38.32	48.01
HORVU7Hr1G055310.1	Barley	extracellular	50.79	47.97
TraesCS2A01G546700.1	Wheat	endoplasmic reticulum	50.79	47.86
TraesCS2A01G546300.1	Wheat	endoplasmic reticulum, vacuole	50.79	47.76
EES11628	Sorghum	extracellular	50.79	47.56
Bra016447.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	38.55	47.49
TraesCS5D01G149800.1	Wheat	endoplasmic reticulum	50.34	47.44
TraesCS7A01G264200.1	Wheat	endoplasmic reticulum	50.57	47.05
HORVU2Hr1G121150.1	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	51.25	46.5
Bra018067.1-P	Field mustard	endoplasmic reticulum	37.41	45.96
Bra011608.1-P	Field mustard	endoplasmic reticulum	36.96	45.79
HORVU2Hr1G121440.2	Barley	endoplasmic reticulum	51.7	45.6
Os04t0670500-01	Rice	extracellular	50.57	45.51
Bra021998.1-P	Field mustard	endoplasmic reticulum	35.15	44.8
Bra000615.1-P	Field mustard	endoplasmic reticulum	36.51	44.6
Bra025046.1-P	Field mustard	endoplasmic reticulum, extracellular	34.69	44.48
Bra019982.1-P	Field mustard	extracellular, golgi	44.44	44.24
Bra033148.1-P	Field mustard	extracellular	37.19	44.2
Bra033146.1-P	Field mustard	vacuole	36.73	43.43
Bra024736.1-P	Field mustard	endoplasmic reticulum, extracellular	35.6	42.2
Bra018066.1-P	Field mustard	endoplasmic reticulum	35.15	42.12

Protein Annotations

Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	EnsemblPlantsGene:Bra038208	EnsemblPlants:Bra038208.1	EnsemblPlants:Bra038208.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008234
GO:GO:0016787	GO:GO:0019538	InterPro:Granulin	InterPro:Granulin_sf	InterPro:IPR037277	UniProt:M4FAU3
PFAM:PF00112	PFAM:PF00396	PFAM:PF08246	PRINTS:PR00705	PANTHER:PTHR12411	PANTHER:PTHR12411:SF352
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	SMART:SM00277	SMART:SM00645
SMART:SM00848	SUPFAM:SSF54001	SUPFAM:SSF57277	SignalP:SignalP-TM	TMHMM:TMhelix	UniParc:UPI0002544CA6
SEG:seg	:	:	:	:	:

Description

AT3G19390 (E=4e-179) | cysteine proteinase, putative / thiol protease, putative

Coordinates

chrA01:-:21622551..21624330

Molecular Weight (calculated)

47899.2 Da

IEP (calculated)

5.789

GRAVY (calculated)

-0.335

Length

441 amino acids

Sequence
(BLAST)

001: MSTRITFTFP SLVILSVLLA SSYLGGVTAK VVDQNLAEQK LFERWLVENH KNYNGLGEKD KRFQIFTDNL KFVQEHNSVP NQSYELGLTR FADLTNEEFR
101: AMYLRKKMER RTSRAPVKAE RYLHKAGDSL PDEVDWRAKG AVAPVRDQGD CGSSWAFSTT GAIEGINKIK TGELITLSVQ ELVDCDRGYN DGCNGGLMDA
201: AFLFIIANGG LDTEADYPYT ATDNNTCNSD KKNTRVVTID GYVAVPGNDE KSLKKAVAHQ PVSVAIEAGG REFQLYKSGV FTGACGTDLD HAALAVGYGT
301: SKEGQDYWII RDSLGSNWGE SGYIRLQRNV NDSAGKCGVA MLASYPTQSV VCDKSYTCPD KSTCCCVSES KGKCDSWGCC PFESATCCEN GSSCCPQLYP
401: VCDLEDGTCR AKANSPLSVK AFTRAPATAT TKATNVLVSS A

Best Arabidopsis Sequence Match ( AT3G19390.1 )
(BLAST)

001: MATSIKSITL ALLIFSVLLI SLSLGSVTAT ETTRNEAEAR RMYERWLVEN RKNYNGLGEK ERRFEIFKDN LKFVEEHSSI PNRTYEVGLT RFADLTNDEF
101: RAIYLRSKME RTRVPVKGEK YLYKVGDSLP DAIDWRAKGA VNPVKDQGSC GSCWAFSAIG AVEGINQIKT GELISLSEQE LVDCDTSYND GCGGGLMDYA
201: FKFIIENGGI DTEEDYPYIA TDVNVCNSDK KNTRVVTIDG YEDVPQNDEK SLKKALANQP ISVAIEAGGR AFQLYTSGVF TGTCGTSLDH GVVAVGYGSE
301: GGQDYWIVRN SWGSNWGESG YFKLERNIKE SSGKCGVAMM ASYPTKSSGS NPPKPPAPSP VVCDKSNTCP AKSTCCCLYE YNGKCYSWGC CPYESATCCD
401: DGSSCCPQSY PVCDLKANTC RMKGNSPLSI KALTRGPAIA TTKSTNMLVG SA

Arabidopsis Description

RD21CProbable cysteine protease RD21C [Source:UniProtKB/Swiss-Prot;Acc:Q9LT78]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.