Factsheet for TraesCS2A01G545700.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 5
endoplasmic reticulum 4
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G306500.1
TraesCS2A01G512100.1
TraesCS2B01G323200.1
TraesCS2B01G540100.2
TraesCS2D01G305000.1
TraesCS2D01G513600.1
TraesCS4A01G214200.2
TraesCS4B01G101800.3
TraesCS4D01G098400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19390.1	TraesCS2A01G306500.1	AT1G21750.1	18676877
AT3G19390.1	TraesCS2B01G323200.1	AT1G21750.1	18676877
AT3G19390.1	TraesCS2D01G305000.1	AT1G21750.1	18676877
AT3G19390.1	TraesCS4A01G214200.2	AT1G21750.1	18676877
AT3G19390.1	TraesCS4B01G101800.3	AT1G21750.1	18676877
AT3G19390.1	TraesCS4D01G098400.1	AT1G21750.1	18676877
AT3G19390.1	TraesCS2A01G512100.1	AT1G47128.1	26016527
AT3G19390.1	TraesCS2B01G540100.2	AT1G47128.1	26016527
AT3G19390.1	TraesCS2D01G513600.1	AT1G47128.1	26016527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G576300.1	Wheat	unclear	96.19	96.8
TraesCS2D01G546600.1	Wheat	plasma membrane, vacuole	94.92	94.32
HORVU2Hr1G121440.2	Barley	endoplasmic reticulum	90.89	85.8
EES13064	Sorghum	extracellular, plasma membrane, vacuole	79.45	80.3
Os04t0670200-02	Rice	extracellular	83.69	80.28
Zm00001d001900_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	78.81	80.0
Zm00001d026577_P001	Maize	extracellular, golgi, plasma membrane	78.6	78.94
TraesCS7A01G264200.1	Wheat	endoplasmic reticulum	66.95	66.67
TraesCS2A01G546700.1	Wheat	endoplasmic reticulum	63.56	64.1
TraesCS2A01G546300.1	Wheat	endoplasmic reticulum, vacuole	63.14	63.54
VIT_03s0180g00010.t01	Wine grape	extracellular	56.57	62.68
TraesCS2A01G512100.1	Wheat	extracellular	59.53	60.95
VIT_07s0031g00050.t01	Wine grape	nucleus	42.37	60.61
Solyc01g107760.2.1	Tomato	extracellular	59.53	59.79
PGSC0003DMT400066566	Potato	endoplasmic reticulum	59.32	59.57
TraesCS4A01G273900.1	Wheat	cytosol, nucleus, plastid	11.86	58.95
TraesCS2A01G054800.1	Wheat	cytosol, mitochondrion, nucleus	18.43	58.78
CDX95457	Canola	endoplasmic reticulum, extracellular, vacuole	55.3	58.13
CDY50157	Canola	endoplasmic reticulum, extracellular, vacuole	55.08	57.91
TraesCS2A01G054500.1	Wheat	cytosol, nucleus, plastid	11.65	57.89
TraesCS2A01G054600.1	Wheat	cytosol, nucleus, plastid	11.65	57.89
AT3G19390.1	Thale cress	endoplasmic reticulum	55.08	57.52
PGSC0003DMT400064314	Potato	endoplasmic reticulum, extracellular, vacuole	43.64	57.06
Solyc02g093040.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	43.86	57.02
Bra022418.1-P	Field mustard	endoplasmic reticulum	54.24	56.89
CDY46179	Canola	endoplasmic reticulum	54.24	56.89
PGSC0003DMT400053921	Potato	extracellular	43.64	56.59
Bra038206.1-P	Field mustard	extracellular, plasma membrane, vacuole	53.6	56.22
TraesCS6A01G346400.1	Wheat	cytosol	11.23	55.79
KRH57968	Soybean	endoplasmic reticulum	42.58	54.92
AT3G19400.1	Thale cress	endoplasmic reticulum, vacuole	41.53	54.14
CDY50154	Canola	endoplasmic reticulum	50.21	53.86
Bra038208.1-P	Field mustard	endoplasmic reticulum	50.21	53.74
KRH07581	Soybean	endoplasmic reticulum	41.53	53.55
AT4G36880.1	Thale cress	vacuole	42.58	53.46
CDX95451	Canola	endoplasmic reticulum, extracellular, vacuole	49.79	53.41
TraesCS6A01G345600.1	Wheat	cytosol, mitochondrion, nucleus	16.74	53.38
KRH04538	Soybean	extracellular	41.31	53.28
CDY22445	Canola	vacuole	42.16	53.21
Solyc03g044230.1.1	Tomato	extracellular	42.58	53.03
Bra010592.1-P	Field mustard	extracellular, golgi, vacuole	41.95	52.94
CDX75633	Canola	vacuole	41.74	52.67
CDX69285	Canola	endoplasmic reticulum, vacuole	41.1	51.87
Bra011746.1-P	Field mustard	vacuole	40.89	51.6
CDY44047	Canola	vacuole	41.74	51.3
CDX99227	Canola	endoplasmic reticulum	53.6	49.9
TraesCS1A01G027300.1	Wheat	endoplasmic reticulum	36.44	49.0
TraesCS4A01G274100.1	Wheat	extracellular	34.53	48.51
TraesCS4A01G274000.1	Wheat	extracellular	34.53	47.8
TraesCS4A01G273800.1	Wheat	extracellular	34.32	47.51
TraesCS6A01G154300.1	Wheat	extracellular	34.32	47.37
TraesCS4A01G238600.1	Wheat	nucleus	36.44	47.25
TraesCS5A01G138700.1	Wheat	plastid	37.71	47.21
TraesCS1A01G223500.1	Wheat	extracellular	33.9	47.2
TraesCS3A01G346900.1	Wheat	endoplasmic reticulum	35.81	46.43
TraesCS3A01G348500.1	Wheat	endoplasmic reticulum	35.81	46.43
TraesCS6A01G346800.1	Wheat	extracellular	32.84	45.72
TraesCS3A01G413000.1	Wheat	endoplasmic reticulum	35.38	45.26
TraesCS6A01G346600.1	Wheat	extracellular	32.42	45.13
TraesCS3A01G413200.1	Wheat	endoplasmic reticulum	35.81	45.07
TraesCS6A01G345900.1	Wheat	extracellular	32.2	44.84
TraesCS6A01G279500.1	Wheat	endoplasmic reticulum, extracellular	34.11	44.72
TraesCS5A01G391500.1	Wheat	endoplasmic reticulum, extracellular	32.42	44.22
TraesCS1A01G325400.1	Wheat	extracellular	42.37	44.15
TraesCS3A01G412900.1	Wheat	endoplasmic reticulum	35.17	44.03
TraesCS4A01G273700.1	Wheat	extracellular	28.18	43.89
TraesCS2A01G056000.1	Wheat	endoplasmic reticulum, extracellular	31.14	43.88
TraesCS6A01G346500.1	Wheat	extracellular	25.85	43.42
TraesCS2A01G054700.1	Wheat	cytosol, mitochondrion, nucleus	9.32	41.12

Protein Annotations

Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	GO:GO:0003674	GO:GO:0003824	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008234	GO:GO:0016787	GO:GO:0019538	InterPro:Granulin
InterPro:Granulin_sf	InterPro:IPR037277	PFAM:PF00112	PFAM:PF00396	PFAM:PF08246	PRINTS:PR00705
ScanProsite:PS00139	ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF343	InterPro:Papain_like_cys_pep_sf
InterPro:Pept_asp_AS	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29
SMART:SM00277	SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SUPFAM:SSF57277	SignalP:SignalP-noTM
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2A01G545700	EnsemblPlants:TraesCS2A01G545700.1	TIGR:cd02248	SEG:seg	:

Description

No Description!

Coordinates

chr2A:+:754448717..754451836

Molecular Weight (calculated)

50665.5 Da

IEP (calculated)

5.355

GRAVY (calculated)

-0.347

Length

472 amino acids

Sequence
(BLAST)

001: MARAAAAILP LLLLLAVAGG ALAASADMSI IAYNAEHGAR GLERTEAEAR AVYDLWLAEN GGGSSPNANS IPERERRFRA FWDNLNFVDA HNARAAAGEE
101: GYRLGMNRFA DLTNDEFRAA YLGVKAQRAR PGRMVGERYR HDGAEELPEA VDWREKGAVA PVKNQGQCGS CWAFSAVSTV ESINQIVTGE MVTLSEQELV
201: ECDTNGQSSG CNGGLMDDAF EFIIKNGGID TEDDYPYKAI DGRCDVLRKN AKVVSIDGFE DVPENDEKSL QKAVAHQPVS VAIEAGGREF QLYHSGVFSG
301: RCGTQLDHGV VAVGYGTENG KDYWIVRNSW GPNWGESGYL RMERNINVTS GKCGIAMMSS YPTKKGANPP KPAPTPPSPP TPPPPVAPDH VCDENFSCPA
401: GSTCCCSFGF RNLCLVWGCC PAEGATCCKD HSSCCPPDYP VCNIRAGTCS ATKNSPLSVK ALKRTLAMRN TA

Best Arabidopsis Sequence Match ( AT1G47128.1 )
(BLAST)

001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA

Arabidopsis Description

RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.