Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 5
- plasma membrane 5
- golgi 4
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS2B01G576300.1 | Wheat | unclear | 95.79 | 97.01 |
TraesCS2A01G545700.1 | Wheat | unclear | 94.32 | 94.92 |
HORVU2Hr1G121440.2 | Barley | endoplasmic reticulum | 91.16 | 86.6 |
EES13064 | Sorghum | extracellular, plasma membrane, vacuole | 79.37 | 80.73 |
Zm00001d001900_P002 | Maize | endoplasmic reticulum, extracellular, plasma membrane | 78.11 | 79.78 |
Os04t0670200-02 | Rice | extracellular | 82.53 | 79.67 |
Zm00001d026577_P001 | Maize | extracellular, golgi, plasma membrane | 78.53 | 79.36 |
TraesCS5D01G149800.1 | Wheat | endoplasmic reticulum | 66.53 | 67.52 |
TraesCS2D01G547600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 52.0 | 67.12 |
TraesCS2D01G547800.1 | Wheat | endoplasmic reticulum, extracellular | 63.16 | 64.1 |
TraesCS7D01G265100.1 | Wheat | cytosol, nucleus, plastid | 34.32 | 63.18 |
VIT_03s0180g00010.t01 | Wine grape | extracellular | 56.42 | 62.91 |
TraesCS2D01G513600.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 58.95 | 60.48 |
VIT_07s0031g00050.t01 | Wine grape | nucleus | 41.89 | 60.3 |
Solyc01g107760.2.1 | Tomato | extracellular | 59.37 | 60.0 |
PGSC0003DMT400066566 | Potato | endoplasmic reticulum | 58.74 | 59.36 |
CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 55.16 | 58.35 |
CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 54.74 | 57.91 |
Solyc02g093040.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 44.0 | 57.58 |
PGSC0003DMT400064314 | Potato | endoplasmic reticulum, extracellular, vacuole | 43.58 | 57.34 |
PGSC0003DMT400053921 | Potato | extracellular | 43.79 | 57.14 |
AT3G19390.1 | Thale cress | endoplasmic reticulum | 54.32 | 57.08 |
CDY46179 | Canola | endoplasmic reticulum | 53.89 | 56.89 |
Bra022418.1-P | Field mustard | endoplasmic reticulum | 53.89 | 56.89 |
Bra038206.1-P | Field mustard | extracellular, plasma membrane, vacuole | 53.26 | 56.22 |
KRH57968 | Soybean | endoplasmic reticulum | 42.74 | 55.46 |
CDY22445 | Canola | vacuole | 43.37 | 55.08 |
Bra010592.1-P | Field mustard | extracellular, golgi, vacuole | 42.74 | 54.28 |
AT4G36880.1 | Thale cress | vacuole | 42.95 | 54.26 |
AT3G19400.1 | Thale cress | endoplasmic reticulum, vacuole | 41.26 | 54.14 |
KRH07581 | Soybean | endoplasmic reticulum | 41.68 | 54.1 |
CDY50154 | Canola | endoplasmic reticulum | 50.11 | 54.09 |
Bra038208.1-P | Field mustard | endoplasmic reticulum | 50.11 | 53.97 |
Solyc03g044230.1.1 | Tomato | extracellular | 42.95 | 53.83 |
KRH04538 | Soybean | extracellular | 41.47 | 53.83 |
CDX75633 | Canola | vacuole | 42.32 | 53.74 |
CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 49.68 | 53.64 |
CDX69285 | Canola | endoplasmic reticulum, vacuole | 41.89 | 53.21 |
Bra011746.1-P | Field mustard | vacuole | 41.47 | 52.67 |
CDY44047 | Canola | vacuole | 42.53 | 52.6 |
TraesCS5D01G152400.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 38.11 | 50.84 |
TraesCS6D01G144100.1 | Wheat | cytosol | 32.21 | 50.66 |
TraesCS1D01G026500.1 | Wheat | endoplasmic reticulum | 36.84 | 49.86 |
CDX99227 | Canola | endoplasmic reticulum | 53.05 | 49.7 |
TraesCS4D01G037000.1 | Wheat | extracellular | 34.95 | 48.68 |
TraesCS4D01G037200.1 | Wheat | extracellular | 34.95 | 48.68 |
TraesCS4D01G037100.1 | Wheat | extracellular | 34.53 | 48.09 |
TraesCS4D01G037500.1 | Wheat | extracellular | 34.53 | 48.09 |
TraesCS4D01G036900.1 | Wheat | extracellular | 34.32 | 47.8 |
TraesCS4D01G037300.1 | Wheat | extracellular | 34.11 | 47.51 |
TraesCS4D01G036700.1 | Wheat | extracellular | 33.89 | 47.21 |
TraesCS4D01G074800.1 | Wheat | endoplasmic reticulum | 36.84 | 47.04 |
TraesCS6D01G144000.1 | Wheat | endoplasmic reticulum, extracellular | 33.68 | 46.78 |
TraesCS3D01G340500.1 | Wheat | endoplasmic reticulum | 35.58 | 46.43 |
TraesCS1D01G225100.1 | Wheat | extracellular | 33.05 | 46.31 |
TraesCS5D01G076500.1 | Wheat | endoplasmic reticulum, extracellular | 32.63 | 46.13 |
TraesCS6D01G328100.1 | Wheat | extracellular | 32.84 | 46.02 |
TraesCS6D01G329900.1 | Wheat | extracellular | 32.84 | 46.02 |
TraesCS6D01G329500.1 | Wheat | extracellular | 32.84 | 46.02 |
TraesCS7D01G471400.1 | Wheat | extracellular | 32.84 | 45.88 |
TraesCS4D01G036600.1 | Wheat | extracellular | 25.68 | 45.86 |
TraesCS4D01G037400.1 | Wheat | extracellular | 31.58 | 45.73 |
TraesCS6D01G328300.1 | Wheat | extracellular | 32.63 | 45.72 |
TraesCS6D01G328500.1 | Wheat | extracellular | 32.63 | 45.72 |
TraesCS6D01G329600.1 | Wheat | extracellular | 32.63 | 45.72 |
TraesCS7D01G220000.1 | Wheat | extracellular | 32.63 | 45.59 |
TraesCS6D01G328600.1 | Wheat | extracellular | 32.42 | 45.43 |
TraesCS6D01G329400.1 | Wheat | extracellular | 31.16 | 45.26 |
TraesCS6D01G328000.1 | Wheat | extracellular | 32.21 | 45.13 |
TraesCS1D01G327000.1 | Wheat | extracellular | 42.95 | 44.93 |
TraesCS5D01G401300.1 | Wheat | extracellular | 32.63 | 44.93 |
TraesCS3D01G407600.1 | Wheat | endoplasmic reticulum | 35.37 | 44.56 |
TraesCS3D01G407700.1 | Wheat | endoplasmic reticulum | 34.95 | 44.27 |
TraesCS3D01G342100.2 | Wheat | endoplasmic reticulum | 35.58 | 42.78 |
TraesCS6D01G259900.1 | Wheat | plastid | 33.26 | 41.8 |
TraesCS6D01G329300.1 | Wheat | extracellular | 25.47 | 38.05 |
TraesCS4D01G036800.1 | Wheat | extracellular | 10.74 | 34.46 |
TraesCS2D01G053700.1 | Wheat | extracellular | 5.89 | 22.95 |
Protein Annotations
Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 |
GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | InterPro:Granulin |
InterPro:Granulin_sf | InterPro:IPR037277 | PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 |
ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF343 | InterPro:Papain_like_cys_pep_sf |
InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 |
SMART:SM00277 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-noTM |
TMHMM:TMhelix | EnsemblPlantsGene:TraesCS2D01G546600 | EnsemblPlants:TraesCS2D01G546600.1 | TIGR:cd02248 | SEG:seg | : |
Description
No Description!
Coordinates
chr2D:+:623325857..623329057
Molecular Weight (calculated)
50933.9 Da
IEP (calculated)
5.877
GRAVY (calculated)
-0.325
Length
475 amino acids
Sequence
(BLAST)
(BLAST)
001: MARAAAAGPG LLLALLLLAV AAVASAADMS IIAYNAEHGA RGLERTEAEA RAVYDLWLAE HGGGSYPNAN SIPERERRFR AFWDNLRFVD AHNARAAAGE
101: EGYRLGMNRF ADLTNDEFRA AYLGVKGTAE RNRAARVVGE RYRHDGSDKL PEAVDWREKG AVAPVKNQGQ CGSCWAFSAV STVESINQIV TGEMVTLSEQ
201: ELVECDINGG SSGCNGGLMD DAFEFIIKNG GIDTEDDYPY KAVDGRCDVL RKNAKVVSID GFEDVPENDE KSLQKAVAHQ PVSVAIEAGG REFQLYHSGV
301: FSGRCGTQLD HGVVAVGYGT ENGKDYWIVR NSWGPNWGEA GYLRMERNIN VTSGKCGIAM MSSYPTKKGA NPPKPAPTPP SPPTPPPPVA PDHVCDENFS
401: CPAGSTCCCS FGFRNLCLVW GCCPAEGATC CKDHSSCCPP DYPVCNIRAG TCSATKNSPL SVKALKRTLA MRNTA
101: EGYRLGMNRF ADLTNDEFRA AYLGVKGTAE RNRAARVVGE RYRHDGSDKL PEAVDWREKG AVAPVKNQGQ CGSCWAFSAV STVESINQIV TGEMVTLSEQ
201: ELVECDINGG SSGCNGGLMD DAFEFIIKNG GIDTEDDYPY KAVDGRCDVL RKNAKVVSID GFEDVPENDE KSLQKAVAHQ PVSVAIEAGG REFQLYHSGV
301: FSGRCGTQLD HGVVAVGYGT ENGKDYWIVR NSWGPNWGEA GYLRMERNIN VTSGKCGIAM MSSYPTKKGA NPPKPAPTPP SPPTPPPPVA PDHVCDENFS
401: CPAGSTCCCS FGFRNLCLVW GCCPAEGATC CKDHSSCCPP DYPVCNIRAG TCSATKNSPL SVKALKRTLA MRNTA
001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
Arabidopsis Description
RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.