Factsheet for Bra038206.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, plasma membrane, vacuole

Predictor Summary:

extracellular 6
golgi 5
plasma membrane 6
endoplasmic reticulum 5
vacuole 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	plasma membrane
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra012293.1-P
Bra014057.1-P
Bra016405.1-P
Bra017948.1-P
Bra040749.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19390.1	Bra012293.1-P	AT1G21750.1	18676877
AT3G19390.1	Bra016405.1-P	AT1G21750.1	18676877
AT3G19390.1	Bra017948.1-P	AT1G21750.1	18676877
AT3G19390.1	Bra014057.1-P	AT1G47128.1	26016527
AT3G19390.1	Bra040749.1-P	AT1G47128.1	26016527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY50157	Canola	endoplasmic reticulum, extracellular, vacuole	97.33	97.55
Bra022418.1-P	Field mustard	endoplasmic reticulum	86.89	86.89
Bra038208.1-P	Field mustard	endoplasmic reticulum	77.56	79.14
AT3G19390.1	Thale cress	endoplasmic reticulum	78.89	78.54
Bra033657.1-P	Field mustard	extracellular	58.67	57.39
TraesCS2D01G547600.1	Wheat	cytosol, mitochondrion, nucleus, plastid	45.56	55.71
Bra040749.1-P	Field mustard	endoplasmic reticulum	56.22	55.36
TraesCS7D01G265100.1	Wheat	cytosol, nucleus, plastid	31.56	55.04
Bra014057.1-P	Field mustard	endoplasmic reticulum	55.33	54.25
Zm00001d001900_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	55.56	53.76
TraesCS2A01G545700.1	Wheat	unclear	56.22	53.6
TraesCS2D01G546600.1	Wheat	plasma membrane, vacuole	56.22	53.26
TraesCS2B01G576300.1	Wheat	unclear	55.11	52.88
Zm00001d026577_P001	Maize	extracellular, golgi, plasma membrane	54.89	52.55
EES13064	Sorghum	extracellular, plasma membrane, vacuole	54.44	52.46
Bra010592.1-P	Field mustard	extracellular, golgi, vacuole	42.67	51.34
Bra011746.1-P	Field mustard	vacuole	42.22	50.8
Os04t0670200-02	Rice	extracellular	55.11	50.41
Bra013705.1-P	Field mustard	extracellular	36.44	50.0
TraesCS7B01G162200.1	Wheat	endoplasmic reticulum	51.11	49.89
TraesCS2B01G577300.1	Wheat	extracellular, golgi	51.56	49.47
Bra018067.1-P	Field mustard	endoplasmic reticulum	39.33	49.3
HORVU7Hr1G055310.1	Barley	extracellular	50.89	49.04
TraesCS7A01G264200.1	Wheat	endoplasmic reticulum	51.56	48.95
TraesCS5D01G149800.1	Wheat	endoplasmic reticulum	50.89	48.93
TraesCS2A01G546700.1	Wheat	endoplasmic reticulum	50.67	48.72
EES11628	Sorghum	extracellular	50.89	48.62
TraesCS2D01G547800.1	Wheat	endoplasmic reticulum, extracellular	50.44	48.5
TraesCS2A01G546300.1	Wheat	endoplasmic reticulum, vacuole	50.44	48.4
HORVU2Hr1G121440.2	Barley	endoplasmic reticulum	53.78	48.4
TraesCS2B01G577500.1	Wheat	endoplasmic reticulum	50.22	48.29
Bra012252.1-P	Field mustard	endoplasmic reticulum	37.56	48.01
Bra016447.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	37.78	47.49
Os04t0670500-01	Rice	extracellular	51.56	47.35
HORVU2Hr1G121150.1	Barley	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	50.22	46.5
Bra011608.1-P	Field mustard	endoplasmic reticulum	36.67	46.35
Bra000615.1-P	Field mustard	endoplasmic reticulum	36.67	45.71
Bra019982.1-P	Field mustard	extracellular, golgi	44.44	45.15
Bra018066.1-P	Field mustard	endoplasmic reticulum	36.89	45.11
Bra025046.1-P	Field mustard	endoplasmic reticulum, extracellular	34.44	45.06
Bra021998.1-P	Field mustard	endoplasmic reticulum	34.44	44.8
Bra033148.1-P	Field mustard	extracellular	36.67	44.47
Bra033146.1-P	Field mustard	vacuole	36.0	43.43
Bra024736.1-P	Field mustard	endoplasmic reticulum, extracellular	35.33	42.74

Protein Annotations

Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	EnsemblPlantsGene:Bra038206	EnsemblPlants:Bra038206.1	EnsemblPlants:Bra038206.1-P
GO:GO:0003674	GO:GO:0003824	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152	GO:GO:0008234
GO:GO:0016787	GO:GO:0019538	InterPro:Granulin	InterPro:Granulin_sf	InterPro:IPR037277	UniProt:M4FAU1
PFAM:PF00112	PFAM:PF00396	PFAM:PF08246	ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411
PANTHER:PTHR12411:SF523	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C
InterPro:Prot_inhib_I29	SMART:SM00277	SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SUPFAM:SSF57277
SignalP:SignalP-noTM	TMHMM:TMhelix	UniParc:UPI0002544CA8	SEG:seg	:	:

Description

AT3G19390 (E=2e-198) | cysteine proteinase, putative / thiol protease, putative

Coordinates

chrA01:-:21646849..21648750

Molecular Weight (calculated)

49715.9 Da

IEP (calculated)

6.086

GRAVY (calculated)

-0.398

Length

450 amino acids

Sequence
(BLAST)

001: MSTTIRFTLV ILSVLLASSS LGGVTAKLLE QNLMERNIFE RWLVENHKNY NGLGEKDQRF QIFMDNVRFV QEHNSVPNQR YELGLTRFAD LTNEEFRAMY
101: LRKKMERTRV SAKAERYLHK VGDKLPDEVD WRAKGAVVPV KDQGSCVVGR FRRLELLSVE GINQIKTGKL VSLSEQELVD CDTSYNEGCN GGLMDYAFQF
201: IIDNGGIDTE EDYPYAATDV NMCNSDKKNT RVVTIDGFED VPENDEKSLK KALAHQPISV AIEAGGREFQ LYQSGVFTGT CGTALDHGVV AVGYGTSQEG
301: QDYWIIRNSW GSNWGESGYV KLQRNIKDSS GKCGVAMMAS YPTKSSSINP PKPPPPSPVV CDKSYTCPAK STCCCLYEYK GKCYSWGCCP YESATCCEDG
401: SSCCPQAYPV CDLEAGTCRM KADSPLSVKA LTRGPATATT KATNVLVSSS

Best Arabidopsis Sequence Match ( AT3G19390.1 )
(BLAST)

001: MATSIKSITL ALLIFSVLLI SLSLGSVTAT ETTRNEAEAR RMYERWLVEN RKNYNGLGEK ERRFEIFKDN LKFVEEHSSI PNRTYEVGLT RFADLTNDEF
101: RAIYLRSKME RTRVPVKGEK YLYKVGDSLP DAIDWRAKGA VNPVKDQGSC GSCWAFSAIG AVEGINQIKT GELISLSEQE LVDCDTSYND GCGGGLMDYA
201: FKFIIENGGI DTEEDYPYIA TDVNVCNSDK KNTRVVTIDG YEDVPQNDEK SLKKALANQP ISVAIEAGGR AFQLYTSGVF TGTCGTSLDH GVVAVGYGSE
301: GGQDYWIVRN SWGSNWGESG YFKLERNIKE SSGKCGVAMM ASYPTKSSGS NPPKPPAPSP VVCDKSNTCP AKSTCCCLYE YNGKCYSWGC CPYESATCCD
401: DGSSCCPQSY PVCDLKANTC RMKGNSPLSI KALTRGPAIA TTKSTNMLVG SA

Arabidopsis Description

RD21CProbable cysteine protease RD21C [Source:UniProtKB/Swiss-Prot;Acc:Q9LT78]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.