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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, plasma membrane, golgi, nucleus

Predictor Summary:
  • extracellular 2
  • endoplasmic reticulum 2
  • vacuole 2
  • plasma membrane 2
  • golgi 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus, secretory
Any Predictor:nucleus, secretory
iPSORT:secretory
MultiLoc:nucleus
TargetP:secretory
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU2Hr1G076360.1
HORVU2Hr1G113460.2
HORVU4Hr1G043910.1
HORVU4Hr1G049820.1
HORVU4Hr1G049880.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G19390.1 HORVU2Hr1G076360.1 AT1G21750.1 18676877
AT3G19390.1 HORVU4Hr1G043910.1 AT1G21750.1 18676877
AT3G19390.1 HORVU4Hr1G049820.1 AT1G21750.1 18676877
AT3G19390.1 HORVU4Hr1G049880.2 AT1G21750.1 18676877
AT3G19390.1 HORVU2Hr1G113460.2 AT1G47128.1 26016527
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2D01G547600.1 Wheat cytosol, mitochondrion, nucleus, plastid 69.55 91.85
TraesCS2A01G546300.1 Wheat endoplasmic reticulum, vacuole 86.63 89.77
TraesCS2A01G546700.1 Wheat endoplasmic reticulum 86.42 89.74
TraesCS2B01G577300.1 Wheat extracellular, golgi 86.42 89.55
TraesCS2D01G547800.1 Wheat endoplasmic reticulum, extracellular 85.8 89.1
TraesCS2B01G577500.1 Wheat endoplasmic reticulum 85.8 89.1
HORVU7Hr1G055310.1 Barley extracellular 68.93 71.73
EES11628 Sorghum extracellular 66.05 68.15
Os04t0670500-01 Rice extracellular 66.26 65.71
VIT_07s0031g00050.t01 Wine grape nucleus 41.36 60.91
VIT_03s0180g00010.t01 Wine grape extracellular 51.44 58.69
HORVU2Hr1G121440.2 Barley endoplasmic reticulum 58.64 57.0
KRH57968 Soybean endoplasmic reticulum 41.77 55.46
KRH07581 Soybean endoplasmic reticulum 41.15 54.64
KRH04538 Soybean extracellular 40.74 54.1
PGSC0003DMT400064314 Potato endoplasmic reticulum, extracellular, vacuole 39.51 53.19
Solyc02g093040.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 39.71 53.17
HORVU2Hr1G113460.2 Barley plasma membrane 53.29 52.97
Bra010592.1-P Field mustard extracellular, golgi, vacuole 40.53 52.67
Solyc01g107760.2.1 Tomato extracellular 50.82 52.55
PGSC0003DMT400053921 Potato extracellular 39.3 52.47
CDY22445 Canola vacuole 40.33 52.41
AT4G36880.1 Thale cress vacuole 40.53 52.39
PGSC0003DMT400066566 Potato endoplasmic reticulum 50.62 52.34
CDY50157 Canola endoplasmic reticulum, extracellular, vacuole 47.94 51.89
AT3G19390.1 Thale cress endoplasmic reticulum 48.15 51.77
CDY50154 Canola endoplasmic reticulum 46.71 51.59
CDY46179 Canola endoplasmic reticulum 47.74 51.56
Bra022418.1-P Field mustard endoplasmic reticulum 47.74 51.56
AT3G19400.1 Thale cress endoplasmic reticulum, vacuole 38.27 51.38
Bra011746.1-P Field mustard vacuole 39.51 51.34
CDX75633 Canola vacuole 39.51 51.34
Bra038208.1-P Field mustard endoplasmic reticulum 46.5 51.25
CDX95457 Canola endoplasmic reticulum, extracellular, vacuole 47.33 51.22
CDX95451 Canola endoplasmic reticulum, extracellular, vacuole 46.3 51.14
CDX69285 Canola endoplasmic reticulum, vacuole 39.3 51.07
CDY44047 Canola vacuole 40.33 51.04
Bra038206.1-P Field mustard extracellular, plasma membrane, vacuole 46.5 50.22
Solyc03g044230.1.1 Tomato extracellular 39.09 50.13
HORVU2Hr1G009150.1 Barley extracellular, vacuole 32.72 46.63
HORVU5Hr1G095580.1 Barley endoplasmic reticulum, extracellular 33.33 46.42
HORVU4Hr1G006310.1 Barley endoplasmic reticulum, extracellular 32.72 46.09
HORVU1Hr1G060040.1 Barley endoplasmic reticulum, extracellular 32.3 46.04
HORVU4Hr1G006270.1 Barley extracellular, vacuole 32.3 45.91
HORVU2Hr1G009610.1 Barley extracellular 32.1 45.88
HORVU2Hr1G009640.1 Barley extracellular 32.1 45.88
HORVU4Hr1G006280.2 Barley extracellular 32.3 45.77
HORVU3Hr1G088270.2 Barley extracellular 34.57 45.53
HORVU6Hr1G084520.5 Barley extracellular 31.69 45.43
HORVU3Hr1G091800.1 Barley endoplasmic reticulum 35.39 45.38
CDX99227 Canola endoplasmic reticulum 47.33 45.36
HORVU2Hr1G009510.1 Barley cytosol 31.89 45.19
HORVU6Hr1G083420.1 Barley extracellular 31.69 45.16
HORVU6Hr1G070320.2 Barley endoplasmic reticulum, extracellular 33.54 44.78
HORVU3Hr1G091920.2 Barley endoplasmic reticulum 34.36 44.77
HORVU3Hr1G088080.2 Barley endoplasmic reticulum, extracellular 34.36 44.65
HORVU3Hr1G091790.1 Barley extracellular 34.16 44.5
HORVU7Hr1G044230.3 Barley extracellular 31.07 44.41
HORVU1Hr1G003940.6 Barley endoplasmic reticulum 30.86 40.65
HORVU2Hr1G023980.2 Barley vacuole 27.57 39.18
HORVU1Hr1G075530.3 Barley plastid 37.45 35.9
Protein Annotations
Gene3D:3.10.20.500Gene3D:3.90.70.10MapMan:50.3.4GO:GO:0003674GO:GO:0003824GO:GO:0006508
GO:GO:0008150GO:GO:0008152GO:GO:0008234GO:GO:0016787GO:GO:0019538InterPro:Granulin
InterPro:Granulin_sfEnsemblPlantsGene:HORVU2Hr1G121150EnsemblPlants:HORVU2Hr1G121150.1InterPro:IPR037277PFAM:PF00112PFAM:PF00396
PFAM:PF08246PRINTS:PR00705ScanProsite:PS00139ScanProsite:PS00639ScanProsite:PS00640PANTHER:PTHR12411
PANTHER:PTHR12411:SF343InterPro:Papain_like_cys_pep_sfInterPro:Pept_asp_ASInterPro:Pept_cys_ASInterPro:Pept_his_ASInterPro:Peptidase_C1A
InterPro:Peptidase_C1A_CInterPro:Prot_inhib_I29SMART:SM00277SMART:SM00645SMART:SM00848SUPFAM:SSF54001
SUPFAM:SSF57277SignalP:SignalP-TMTMHMM:TMhelixSEG:seg::
Description
No Description!
Coordinates
chrchr2H:+:750974436..750982041
Molecular Weight (calculated)
51208.3 Da
IEP (calculated)
7.726
GRAVY (calculated)
-0.303
Length
486 amino acids
Sequence
(BLAST)
001: XXXXXXXXXA ATMAGRGTAA VAFVCLVFLA ASSAAAAAHV HDAAEHGVPQ GLTRRTEADV RAMFDAWLAR HGRTYNALAE YVHRFRAFRD NLDFVDAHNA
101: RAVQRGGFRL GMNRFADLTN AEFRAAYLGS STAGRGRNAV GERYRYRAED VLPESVDWRE KGAVAPVKNQ GHCGSCWAFS TVAAVEGVNK IVTGDLVTLS
201: EQELLDCSRN GQNNGCNGGI MDDAFDFIVR NGGIDTEKDY PYAAKEGKCD LAKKARTVVS IDGFEDVPDD DEASLMKAVA HQPVSVAIEA GGREFQLYES
301: GVFTGRCGTE LDHAVLAVGY GTGTEADGGK DFWLVRNSWG PGWGEGGYIR MERNVTARAG KCGIAMFASY PVKNGPNPKP IPPAPEEKCD RYSSCPAGST
401: CCCTYGVRSV CLAWGCCPAK GATCCRDRTT CCPSEYPVCN AGKRTCAKSN GSPYTVDALP RTPAKRQRTA VSELVLYSVP SRGRCM
Best Arabidopsis Sequence Match ( AT1G09850.1 )
(BLAST)
001: MSMSSSSFIS LTFFFLLLVS SSSSSDDISE LFDDWCQKHG KTYGSEEERQ QRIQIFKDNH DFVTQHNLIT NATYSLSLNA FADLTHHEFK ASRLGLSVSA
101: PSVIMASKGQ SLGGSVKVPD SVDWRKKGAV TNVKDQGSCG ACWSFSATGA MEGINQIVTG DLISLSEQEL IDCDKSYNAG CNGGLMDYAF EFVIKNHGID
201: TEKDYPYQER DGTCKKDKLK QKVVTIDSYA GVKSNDEKAL MEAVAAQPVS VGICGSERAF QLYSSGIFSG PCSTSLDHAV LIVGYGSQNG VDYWIVKNSW
301: GKSWGMDGFM HMQRNTENSD GVCGINMLAS YPIKTHPNPP PPSPPGPTKC NLFTYCSSGE TCCCARELFG LCFSWKCCEI ESAVCCKDGR HCCPHDYPVC
401: DTTRSLCLKK TGNFTAIKPF WKKNSSKQLG RFEEWVM
Arabidopsis Description
XBCP3At1g09850 [Source:UniProtKB/TrEMBL;Acc:Q0WVJ5]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.