Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 4
- golgi 4
- plasma membrane 4
- endoplasmic reticulum 5
- vacuole 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G546700.1 | Wheat | endoplasmic reticulum | 95.31 | 95.51 |
| TraesCS2D01G547600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 74.63 | 95.11 |
| TraesCS2B01G577300.1 | Wheat | extracellular, golgi | 93.39 | 93.39 |
| TraesCS2D01G547800.1 | Wheat | endoplasmic reticulum, extracellular | 92.54 | 92.73 |
| TraesCS2B01G577500.1 | Wheat | endoplasmic reticulum | 91.9 | 92.09 |
| HORVU2Hr1G121150.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 89.77 | 86.63 |
| TraesCS7A01G264200.1 | Wheat | endoplasmic reticulum | 72.71 | 71.94 |
| EES11628 | Sorghum | extracellular | 68.44 | 68.15 |
| Os04t0670500-01 | Rice | extracellular | 69.94 | 66.94 |
| TraesCS2A01G545700.1 | Wheat | unclear | 63.54 | 63.14 |
| VIT_07s0031g00050.t01 | Wine grape | nucleus | 42.86 | 60.91 |
| VIT_03s0180g00010.t01 | Wine grape | extracellular | 53.94 | 59.39 |
| TraesCS2A01G054600.1 | Wheat | cytosol, nucleus, plastid | 11.3 | 55.79 |
| TraesCS4A01G273900.1 | Wheat | cytosol, nucleus, plastid | 11.3 | 55.79 |
| TraesCS2A01G054500.1 | Wheat | cytosol, nucleus, plastid | 11.3 | 55.79 |
| TraesCS2A01G512100.1 | Wheat | extracellular | 54.58 | 55.53 |
| TraesCS2A01G054800.1 | Wheat | cytosol, mitochondrion, nucleus | 17.48 | 55.41 |
| KRH57968 | Soybean | endoplasmic reticulum | 43.07 | 55.19 |
| KRH07581 | Soybean | endoplasmic reticulum | 42.43 | 54.37 |
| KRH04538 | Soybean | extracellular | 42.0 | 53.83 |
| TraesCS6A01G346400.1 | Wheat | cytosol | 10.87 | 53.68 |
| Solyc01g107760.2.1 | Tomato | extracellular | 53.3 | 53.19 |
| PGSC0003DMT400064314 | Potato | endoplasmic reticulum, extracellular, vacuole | 40.94 | 53.19 |
| Solyc02g093040.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 41.15 | 53.17 |
| PGSC0003DMT400066566 | Potato | endoplasmic reticulum | 52.88 | 52.77 |
| Bra010592.1-P | Field mustard | extracellular, golgi, vacuole | 41.79 | 52.41 |
| CDY22445 | Canola | vacuole | 41.79 | 52.41 |
| AT3G19390.1 | Thale cress | endoplasmic reticulum | 50.32 | 52.21 |
| PGSC0003DMT400053921 | Potato | extracellular | 40.51 | 52.2 |
| CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 49.89 | 52.12 |
| AT4G36880.1 | Thale cress | vacuole | 41.58 | 51.86 |
| CDY46179 | Canola | endoplasmic reticulum | 49.68 | 51.78 |
| Bra022418.1-P | Field mustard | endoplasmic reticulum | 49.68 | 51.78 |
| CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 49.47 | 51.67 |
| CDX75633 | Canola | vacuole | 41.15 | 51.6 |
| Bra011746.1-P | Field mustard | vacuole | 40.94 | 51.34 |
| CDX69285 | Canola | endoplasmic reticulum, vacuole | 40.94 | 51.34 |
| CDY50154 | Canola | endoplasmic reticulum | 47.97 | 51.14 |
| AT3G19400.1 | Thale cress | endoplasmic reticulum, vacuole | 39.23 | 50.83 |
| Bra038208.1-P | Field mustard | endoplasmic reticulum | 47.76 | 50.79 |
| CDY44047 | Canola | vacuole | 41.58 | 50.78 |
| CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 47.55 | 50.68 |
| Bra038206.1-P | Field mustard | extracellular, plasma membrane, vacuole | 48.4 | 50.44 |
| TraesCS6A01G345600.1 | Wheat | cytosol, mitochondrion, nucleus | 15.78 | 50.0 |
| TraesCS1A01G027300.1 | Wheat | endoplasmic reticulum | 37.31 | 49.86 |
| Solyc03g044230.1.1 | Tomato | extracellular | 39.87 | 49.34 |
| TraesCS2A01G056000.1 | Wheat | endoplasmic reticulum, extracellular | 33.9 | 47.46 |
| TraesCS5A01G391500.1 | Wheat | endoplasmic reticulum, extracellular | 34.97 | 47.4 |
| TraesCS6A01G154300.1 | Wheat | extracellular | 34.54 | 47.37 |
| TraesCS3A01G346900.1 | Wheat | endoplasmic reticulum | 36.67 | 47.25 |
| TraesCS5A01G138700.1 | Wheat | plastid | 37.95 | 47.21 |
| TraesCS4A01G274100.1 | Wheat | extracellular | 33.69 | 47.02 |
| TraesCS4A01G238600.1 | Wheat | nucleus | 36.46 | 46.98 |
| TraesCS3A01G348500.1 | Wheat | endoplasmic reticulum | 36.46 | 46.98 |
| TraesCS4A01G274000.1 | Wheat | extracellular | 34.12 | 46.92 |
| TraesCS6A01G346800.1 | Wheat | extracellular | 33.69 | 46.61 |
| TraesCS4A01G273800.1 | Wheat | extracellular | 33.69 | 46.33 |
| TraesCS1A01G223500.1 | Wheat | extracellular | 33.48 | 46.31 |
| TraesCS6A01G346600.1 | Wheat | extracellular | 33.26 | 46.02 |
| TraesCS6A01G279500.1 | Wheat | endoplasmic reticulum, extracellular | 35.18 | 45.83 |
| TraesCS6A01G346500.1 | Wheat | extracellular | 27.29 | 45.55 |
| TraesCS3A01G413000.1 | Wheat | endoplasmic reticulum | 35.82 | 45.53 |
| CDX99227 | Canola | endoplasmic reticulum | 49.04 | 45.36 |
| TraesCS3A01G413200.1 | Wheat | endoplasmic reticulum | 36.03 | 45.07 |
| TraesCS6A01G345900.1 | Wheat | extracellular | 32.41 | 44.84 |
| TraesCS3A01G412900.1 | Wheat | endoplasmic reticulum | 36.03 | 44.83 |
| TraesCS2A01G054700.1 | Wheat | cytosol, mitochondrion, nucleus | 9.59 | 42.06 |
| TraesCS4A01G273700.1 | Wheat | extracellular | 27.08 | 41.91 |
| TraesCS1A01G325400.1 | Wheat | extracellular | 40.3 | 41.72 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | InterPro:Granulin |
| InterPro:Granulin_sf | InterPro:IPR037277 | PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 |
| ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF343 | InterPro:Papain_like_cys_pep_sf |
| InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 |
| SMART:SM00277 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | EnsemblPlantsGene:TraesCS2A01G546300 | EnsemblPlants:TraesCS2A01G546300.1 | TIGR:cd02248 | SEG:seg | : |
Description
No Description!
Coordinates
chr2A:+:755118520..755119929
Molecular Weight (calculated)
49977.7 Da
IEP (calculated)
7.431
GRAVY (calculated)
-0.225
Length
469 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGRGAAVAV VALVVFLVFF AASSSAAAAH VDDAAEHGAR GLTRRTEADV RAMFDAWLAR HGRSYNALAE YVRRFRAFRD NLDFVDAHNA RAAQRGGFRL
101: GMNRFADLTN AEFRAAYLGA GAAGRARNAV GDRYRYHAED VLPQSVDWRE KGAVAPVKNQ GRCGSCWAFS TVAAVEGVNK IVTGDLVKLS EQELVDCSRN
201: GQNSGCNGGI MDDAFDFIVR NGGIDTAEDY PYTAKEGKCD LAMKARKVVS IDGFEDVPAD DEASLMKAVA HQPVSVAIEA GGREFQLYES GVFTGRCGTE
301: LDHAVLAVGY GTEADGGKGF WLVRNSWGPG WGEGGYIRME RNVTASSGKC GIAMFASYPV KNGPNPKPAP PAPEEKCDRY SSCPAGSTCC CTYGVRSVCL
401: AWGCCPAEGA TCCRDGATCC PSEYPVCNAG SRTCAKSKGS PYTVDALPRT PAKRRRTAVS DLVDSIFSI
101: GMNRFADLTN AEFRAAYLGA GAAGRARNAV GDRYRYHAED VLPQSVDWRE KGAVAPVKNQ GRCGSCWAFS TVAAVEGVNK IVTGDLVKLS EQELVDCSRN
201: GQNSGCNGGI MDDAFDFIVR NGGIDTAEDY PYTAKEGKCD LAMKARKVVS IDGFEDVPAD DEASLMKAVA HQPVSVAIEA GGREFQLYES GVFTGRCGTE
301: LDHAVLAVGY GTEADGGKGF WLVRNSWGPG WGEGGYIRME RNVTASSGKC GIAMFASYPV KNGPNPKPAP PAPEEKCDRY SSCPAGSTCC CTYGVRSVCL
401: AWGCCPAEGA TCCRDGATCC PSEYPVCNAG SRTCAKSKGS PYTVDALPRT PAKRRRTAVS DLVDSIFSI
001: MSMSSSSFIS LTFFFLLLVS SSSSSDDISE LFDDWCQKHG KTYGSEEERQ QRIQIFKDNH DFVTQHNLIT NATYSLSLNA FADLTHHEFK ASRLGLSVSA
101: PSVIMASKGQ SLGGSVKVPD SVDWRKKGAV TNVKDQGSCG ACWSFSATGA MEGINQIVTG DLISLSEQEL IDCDKSYNAG CNGGLMDYAF EFVIKNHGID
201: TEKDYPYQER DGTCKKDKLK QKVVTIDSYA GVKSNDEKAL MEAVAAQPVS VGICGSERAF QLYSSGIFSG PCSTSLDHAV LIVGYGSQNG VDYWIVKNSW
301: GKSWGMDGFM HMQRNTENSD GVCGINMLAS YPIKTHPNPP PPSPPGPTKC NLFTYCSSGE TCCCARELFG LCFSWKCCEI ESAVCCKDGR HCCPHDYPVC
401: DTTRSLCLKK TGNFTAIKPF WKKNSSKQLG RFEEWVM
101: PSVIMASKGQ SLGGSVKVPD SVDWRKKGAV TNVKDQGSCG ACWSFSATGA MEGINQIVTG DLISLSEQEL IDCDKSYNAG CNGGLMDYAF EFVIKNHGID
201: TEKDYPYQER DGTCKKDKLK QKVVTIDSYA GVKSNDEKAL MEAVAAQPVS VGICGSERAF QLYSSGIFSG PCSTSLDHAV LIVGYGSQNG VDYWIVKNSW
301: GKSWGMDGFM HMQRNTENSD GVCGINMLAS YPIKTHPNPP PPSPPGPTKC NLFTYCSSGE TCCCARELFG LCFSWKCCEI ESAVCCKDGR HCCPHDYPVC
401: DTTRSLCLKK TGNFTAIKPF WKKNSSKQLG RFEEWVM
Arabidopsis Description
XBCP3At1g09850 [Source:UniProtKB/TrEMBL;Acc:Q0WVJ5]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.