Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 7
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G19390.1 | KXG26345 | AT1G21750.1 | 18676877 |
| AT3G19390.1 | KXG28001 | AT1G21750.1 | 18676877 |
| AT3G19390.1 | KXG27269 | AT1G47128.1 | 26016527 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G547600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 59.24 | 75.82 |
| TraesCS2D01G547800.1 | Wheat | endoplasmic reticulum, extracellular | 69.85 | 70.3 |
| TraesCS5D01G149800.1 | Wheat | endoplasmic reticulum | 69.43 | 69.87 |
| TraesCS7B01G162200.1 | Wheat | endoplasmic reticulum | 67.94 | 69.41 |
| TraesCS2B01G577300.1 | Wheat | extracellular, golgi | 69.0 | 69.3 |
| TraesCS2B01G577500.1 | Wheat | endoplasmic reticulum | 68.79 | 69.23 |
| TraesCS2A01G546700.1 | Wheat | endoplasmic reticulum | 68.58 | 69.02 |
| TraesCS7A01G264200.1 | Wheat | endoplasmic reticulum | 69.43 | 68.99 |
| HORVU7Hr1G055310.1 | Barley | extracellular | 68.15 | 68.74 |
| TraesCS7D01G265100.1 | Wheat | cytosol, nucleus, plastid | 37.58 | 68.6 |
| TraesCS2A01G546300.1 | Wheat | endoplasmic reticulum, vacuole | 68.15 | 68.44 |
| HORVU2Hr1G121150.1 | Barley | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 68.15 | 66.05 |
| EES13064 | Sorghum | extracellular, plasma membrane, vacuole | 63.69 | 64.24 |
| Os04t0670500-01 | Rice | extracellular | 66.67 | 64.08 |
| VIT_07s0031g00050.t01 | Wine grape | nucleus | 43.31 | 61.82 |
| VIT_03s0180g00010.t01 | Wine grape | extracellular | 52.87 | 58.45 |
| KRH57968 | Soybean | endoplasmic reticulum | 42.89 | 55.19 |
| Solyc01g107760.2.1 | Tomato | extracellular | 54.35 | 54.47 |
| Solyc02g093040.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 41.83 | 54.27 |
| PGSC0003DMT400066566 | Potato | endoplasmic reticulum | 54.14 | 54.26 |
| KRH07581 | Soybean | endoplasmic reticulum | 42.04 | 54.1 |
| PGSC0003DMT400064314 | Potato | endoplasmic reticulum, extracellular, vacuole | 41.4 | 54.02 |
| KRH04538 | Soybean | extracellular | 41.83 | 53.83 |
| KXG27269 | Sorghum | endoplasmic reticulum | 52.65 | 53.45 |
| AT3G19400.1 | Thale cress | endoplasmic reticulum, vacuole | 40.98 | 53.31 |
| CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 50.32 | 52.78 |
| CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 50.32 | 52.78 |
| AT4G36880.1 | Thale cress | vacuole | 42.04 | 52.66 |
| AT3G19390.1 | Thale cress | endoplasmic reticulum | 50.32 | 52.43 |
| Bra010592.1-P | Field mustard | extracellular, golgi, vacuole | 41.61 | 52.41 |
| CDY22445 | Canola | vacuole | 41.61 | 52.41 |
| KXG19778 | Sorghum | cytosol, nucleus, plastid | 34.18 | 52.27 |
| Bra022418.1-P | Field mustard | endoplasmic reticulum | 49.68 | 52.0 |
| CDY46179 | Canola | endoplasmic reticulum | 49.68 | 52.0 |
| PGSC0003DMT400053921 | Potato | extracellular | 40.13 | 51.92 |
| CDX75633 | Canola | vacuole | 41.19 | 51.87 |
| CDX69285 | Canola | endoplasmic reticulum, vacuole | 41.19 | 51.87 |
| Bra011746.1-P | Field mustard | vacuole | 41.19 | 51.87 |
| CDY50154 | Canola | endoplasmic reticulum | 47.56 | 50.91 |
| Bra038206.1-P | Field mustard | extracellular, plasma membrane, vacuole | 48.62 | 50.89 |
| Bra038208.1-P | Field mustard | endoplasmic reticulum | 47.56 | 50.79 |
| CDY44047 | Canola | vacuole | 41.4 | 50.78 |
| CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 47.35 | 50.68 |
| Solyc03g044230.1.1 | Tomato | extracellular | 39.92 | 49.6 |
| KXG20680 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 37.16 | 48.88 |
| KXG19775 | Sorghum | extracellular | 35.24 | 48.82 |
| KXG19777 | Sorghum | extracellular | 35.24 | 48.82 |
| EER89590 | Sorghum | extracellular | 35.24 | 48.82 |
| EES10550 | Sorghum | extracellular | 35.24 | 48.82 |
| EER88857 | Sorghum | endoplasmic reticulum | 38.0 | 48.12 |
| EES10463 | Sorghum | endoplasmic reticulum | 33.97 | 47.34 |
| EES01927 | Sorghum | extracellular | 36.94 | 47.15 |
| EES15197 | Sorghum | endoplasmic reticulum | 37.16 | 47.04 |
| EES10461 | Sorghum | endoplasmic reticulum | 33.76 | 47.04 |
| KXG25861 | Sorghum | endoplasmic reticulum | 33.55 | 46.88 |
| KXG25862 | Sorghum | endoplasmic reticulum | 33.55 | 46.88 |
| KXG25863 | Sorghum | endoplasmic reticulum | 33.55 | 46.88 |
| OQU81188 | Sorghum | cytosol, nucleus, plastid | 27.39 | 46.74 |
| KXG21060 | Sorghum | endoplasmic reticulum, golgi, vacuole | 36.52 | 46.36 |
| EES02142 | Sorghum | vacuole | 37.16 | 46.3 |
| CDX99227 | Canola | endoplasmic reticulum | 49.68 | 46.15 |
| OQU81187 | Sorghum | endoplasmic reticulum, extracellular | 33.97 | 46.11 |
| EER90747 | Sorghum | endoplasmic reticulum | 37.16 | 45.93 |
| EES09937 | Sorghum | endoplasmic reticulum | 36.09 | 45.82 |
| EER88858 | Sorghum | golgi, vacuole | 37.79 | 44.84 |
| EER93437 | Sorghum | endoplasmic reticulum | 33.33 | 44.48 |
| EES07368 | Sorghum | extracellular | 33.55 | 44.38 |
| EES18460 | Sorghum | endoplasmic reticulum | 42.46 | 43.29 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | EntrezGene:8082585 | UniProt:C5YA39 | ncoils:Coil |
| EnsemblPlants:EES11628 | ProteinID:EES11628 | ProteinID:EES11628.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004197 |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005615 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005764 | GO:GO:0005773 | GO:GO:0006508 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0008234 | GO:GO:0009056 | GO:GO:0009555 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0051603 | InterPro:Granulin | InterPro:Granulin_sf | InterPro:IPR037277 | PFAM:PF00112 |
| PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 | ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 |
| PANTHER:PTHR12411 | PANTHER:PTHR12411:SF343 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS |
| InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 | SMART:SM00277 | SMART:SM00645 | SMART:SM00848 |
| EnsemblPlantsGene:SORBI_3006G260700 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0001A872B4 |
| RefSeq:XP_002447300.1 | SEG:seg | : | : | : | : |
Description
hypothetical protein
Coordinates
chr6:+:59581125..59582874
Molecular Weight (calculated)
49792.5 Da
IEP (calculated)
6.738
GRAVY (calculated)
-0.205
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGVVGRGIV ALALSILLLL CFTSATAASA APGSDAVGGG MARTEAQVRA MYEQWMARHG KAASNALGEH DRRFRAFWDN LRFVDAHNAR AGARGYRLGI
101: NRFADLTNAE FRAAYLSAGA RNGTATAATG ERYRHDGVEA LPEFVDWRQK GAVAPVKNQG QCGSCWAFSA VGAVEGINQI VTGELVTLSE QELVDCSKNG
201: QNGGCDGGMM DDAFAFIVGN GGIDTDKDYP YTARDGKCDV AKRSRHVVSI DGFEGVPRND EKSLQKAVAH QPVAVAIEAG GREFQLYQSG VFTGRCGTSL
301: DHGVVAVGYG TEADGGRDYW LVRNSWGADW GEGGYIRMER NVGARAGKCG IAMEASYPVK SGANPDPSPS PPTPVTCDRY SACPAGSTCC CTYGVRNVCL
401: VWGCCPAEGA TCCKDRATCC PADHPVCDAR TRTCAKSRGS TDTVEAMIRF PASRHAGSLI AEELVDSVFA I
101: NRFADLTNAE FRAAYLSAGA RNGTATAATG ERYRHDGVEA LPEFVDWRQK GAVAPVKNQG QCGSCWAFSA VGAVEGINQI VTGELVTLSE QELVDCSKNG
201: QNGGCDGGMM DDAFAFIVGN GGIDTDKDYP YTARDGKCDV AKRSRHVVSI DGFEGVPRND EKSLQKAVAH QPVAVAIEAG GREFQLYQSG VFTGRCGTSL
301: DHGVVAVGYG TEADGGRDYW LVRNSWGADW GEGGYIRMER NVGARAGKCG IAMEASYPVK SGANPDPSPS PPTPVTCDRY SACPAGSTCC CTYGVRNVCL
401: VWGCCPAEGA TCCKDRATCC PADHPVCDAR TRTCAKSRGS TDTVEAMIRF PASRHAGSLI AEELVDSVFA I
001: MATSIKSITL ALLIFSVLLI SLSLGSVTAT ETTRNEAEAR RMYERWLVEN RKNYNGLGEK ERRFEIFKDN LKFVEEHSSI PNRTYEVGLT RFADLTNDEF
101: RAIYLRSKME RTRVPVKGEK YLYKVGDSLP DAIDWRAKGA VNPVKDQGSC GSCWAFSAIG AVEGINQIKT GELISLSEQE LVDCDTSYND GCGGGLMDYA
201: FKFIIENGGI DTEEDYPYIA TDVNVCNSDK KNTRVVTIDG YEDVPQNDEK SLKKALANQP ISVAIEAGGR AFQLYTSGVF TGTCGTSLDH GVVAVGYGSE
301: GGQDYWIVRN SWGSNWGESG YFKLERNIKE SSGKCGVAMM ASYPTKSSGS NPPKPPAPSP VVCDKSNTCP AKSTCCCLYE YNGKCYSWGC CPYESATCCD
401: DGSSCCPQSY PVCDLKANTC RMKGNSPLSI KALTRGPAIA TTKSTNMLVG SA
101: RAIYLRSKME RTRVPVKGEK YLYKVGDSLP DAIDWRAKGA VNPVKDQGSC GSCWAFSAIG AVEGINQIKT GELISLSEQE LVDCDTSYND GCGGGLMDYA
201: FKFIIENGGI DTEEDYPYIA TDVNVCNSDK KNTRVVTIDG YEDVPQNDEK SLKKALANQP ISVAIEAGGR AFQLYTSGVF TGTCGTSLDH GVVAVGYGSE
301: GGQDYWIVRN SWGSNWGESG YFKLERNIKE SSGKCGVAMM ASYPTKSSGS NPPKPPAPSP VVCDKSNTCP AKSTCCCLYE YNGKCYSWGC CPYESATCCD
401: DGSSCCPQSY PVCDLKANTC RMKGNSPLSI KALTRGPAIA TTKSTNMLVG SA
Arabidopsis Description
RD21CProbable cysteine protease RD21C [Source:UniProtKB/Swiss-Prot;Acc:Q9LT78]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.