Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 4
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G055310.1 | Barley | extracellular | 94.02 | 94.22 |
| TraesCS7B01G162200.1 | Wheat | endoplasmic reticulum | 91.88 | 93.28 |
| TraesCS7A01G264200.1 | Wheat | endoplasmic reticulum | 94.44 | 93.25 |
| TraesCS7D01G265100.1 | Wheat | cytosol, nucleus, plastid | 46.15 | 83.72 |
| TraesCS2D01G547600.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 60.04 | 76.36 |
| TraesCS2D01G547800.1 | Wheat | endoplasmic reticulum, extracellular | 73.08 | 73.08 |
| Os04t0670500-01 | Rice | extracellular | 74.15 | 70.82 |
| EES11628 | Sorghum | extracellular | 69.87 | 69.43 |
| TraesCS2D01G546600.1 | Wheat | plasma membrane, vacuole | 67.52 | 66.53 |
| VIT_07s0031g00050.t01 | Wine grape | nucleus | 42.31 | 60.0 |
| VIT_03s0180g00010.t01 | Wine grape | extracellular | 54.06 | 59.39 |
| TraesCS2D01G513600.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 56.2 | 56.8 |
| Solyc01g107760.2.1 | Tomato | extracellular | 55.77 | 55.53 |
| PGSC0003DMT400066566 | Potato | endoplasmic reticulum | 55.77 | 55.53 |
| Solyc02g093040.2.1 | Tomato | endoplasmic reticulum, extracellular, vacuole | 42.52 | 54.82 |
| KRH57968 | Soybean | endoplasmic reticulum | 42.52 | 54.37 |
| PGSC0003DMT400064314 | Potato | endoplasmic reticulum, extracellular, vacuole | 41.88 | 54.29 |
| KRH04538 | Soybean | extracellular | 41.88 | 53.55 |
| KRH07581 | Soybean | endoplasmic reticulum | 41.88 | 53.55 |
| CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 50.64 | 52.78 |
| PGSC0003DMT400053921 | Potato | extracellular | 41.03 | 52.75 |
| CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 50.43 | 52.56 |
| AT3G19400.1 | Thale cress | endoplasmic reticulum, vacuole | 40.6 | 52.49 |
| AT3G19390.1 | Thale cress | endoplasmic reticulum | 50.43 | 52.21 |
| CDY46179 | Canola | endoplasmic reticulum | 50.0 | 52.0 |
| Bra022418.1-P | Field mustard | endoplasmic reticulum | 50.0 | 52.0 |
| CDY22445 | Canola | vacuole | 41.45 | 51.87 |
| Bra010592.1-P | Field mustard | extracellular, golgi, vacuole | 41.45 | 51.87 |
| CDX75633 | Canola | vacuole | 41.45 | 51.87 |
| AT4G36880.1 | Thale cress | vacuole | 41.67 | 51.86 |
| Bra011746.1-P | Field mustard | vacuole | 41.24 | 51.6 |
| CDX69285 | Canola | endoplasmic reticulum, vacuole | 41.03 | 51.34 |
| TraesCS1D01G026500.1 | Wheat | endoplasmic reticulum | 38.25 | 51.0 |
| Bra038206.1-P | Field mustard | extracellular, plasma membrane, vacuole | 48.93 | 50.89 |
| CDY50154 | Canola | endoplasmic reticulum | 47.65 | 50.68 |
| CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 47.44 | 50.45 |
| Bra038208.1-P | Field mustard | endoplasmic reticulum | 47.44 | 50.34 |
| TraesCS5D01G152400.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 38.25 | 50.28 |
| CDY44047 | Canola | vacuole | 41.24 | 50.26 |
| Solyc03g044230.1.1 | Tomato | extracellular | 40.6 | 50.13 |
| TraesCS6D01G144100.1 | Wheat | cytosol | 32.05 | 49.67 |
| TraesCS4D01G074800.1 | Wheat | endoplasmic reticulum | 37.82 | 47.58 |
| TraesCS3D01G340500.1 | Wheat | endoplasmic reticulum | 36.75 | 47.25 |
| TraesCS5D01G401300.1 | Wheat | extracellular | 34.19 | 46.38 |
| TraesCS4D01G037200.1 | Wheat | extracellular | 33.76 | 46.33 |
| TraesCS4D01G037000.1 | Wheat | extracellular | 33.76 | 46.33 |
| TraesCS4D01G037500.1 | Wheat | extracellular | 33.55 | 46.04 |
| TraesCS4D01G037100.1 | Wheat | extracellular | 33.55 | 46.04 |
| CDX99227 | Canola | endoplasmic reticulum | 49.79 | 45.96 |
| TraesCS4D01G036900.1 | Wheat | extracellular | 33.33 | 45.75 |
| TraesCS6D01G144000.1 | Wheat | endoplasmic reticulum, extracellular | 33.33 | 45.61 |
| TraesCS5D01G076500.1 | Wheat | endoplasmic reticulum, extracellular | 32.69 | 45.54 |
| TraesCS4D01G037300.1 | Wheat | extracellular | 33.12 | 45.45 |
| TraesCS6D01G328500.1 | Wheat | extracellular | 32.91 | 45.43 |
| TraesCS1D01G225100.1 | Wheat | extracellular | 32.69 | 45.13 |
| TraesCS6D01G329900.1 | Wheat | extracellular | 32.69 | 45.13 |
| TraesCS6D01G329500.1 | Wheat | extracellular | 32.69 | 45.13 |
| TraesCS6D01G328000.1 | Wheat | extracellular | 32.69 | 45.13 |
| TraesCS6D01G328600.1 | Wheat | extracellular | 32.48 | 44.84 |
| TraesCS6D01G329600.1 | Wheat | extracellular | 32.48 | 44.84 |
| TraesCS6D01G328300.1 | Wheat | extracellular | 32.48 | 44.84 |
| TraesCS4D01G036700.1 | Wheat | extracellular | 32.27 | 44.28 |
| TraesCS6D01G328100.1 | Wheat | extracellular | 32.05 | 44.25 |
| TraesCS7D01G471400.1 | Wheat | extracellular | 31.84 | 43.82 |
| TraesCS6D01G329400.1 | Wheat | extracellular | 30.56 | 43.73 |
| TraesCS7D01G220000.1 | Wheat | extracellular | 31.62 | 43.53 |
| TraesCS3D01G407600.1 | Wheat | endoplasmic reticulum | 34.83 | 43.24 |
| TraesCS4D01G036600.1 | Wheat | extracellular | 24.57 | 43.23 |
| TraesCS3D01G407700.1 | Wheat | endoplasmic reticulum | 34.62 | 43.2 |
| TraesCS1D01G327000.1 | Wheat | extracellular | 41.67 | 42.95 |
| TraesCS3D01G342100.2 | Wheat | endoplasmic reticulum | 36.11 | 42.78 |
| TraesCS4D01G037400.1 | Wheat | extracellular | 29.7 | 42.38 |
| TraesCS6D01G259900.1 | Wheat | plastid | 32.48 | 40.21 |
| TraesCS6D01G329300.1 | Wheat | extracellular | 24.36 | 35.85 |
| TraesCS4D01G036800.1 | Wheat | extracellular | 10.68 | 33.78 |
| TraesCS2D01G053700.1 | Wheat | extracellular | 5.98 | 22.95 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | InterPro:Granulin |
| InterPro:Granulin_sf | InterPro:IPR037277 | PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PRINTS:PR00705 |
| ScanProsite:PS00139 | ScanProsite:PS00639 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF343 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_cys_AS |
| InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 | SMART:SM00277 | SMART:SM00645 |
| SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-noTM | TMHMM:TMhelix | EnsemblPlantsGene:TraesCS5D01G149800 |
| EnsemblPlants:TraesCS5D01G149800.1 | TIGR:cd02248 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr5D:-:238669078..238670609
Molecular Weight (calculated)
50331.0 Da
IEP (calculated)
6.848
GRAVY (calculated)
-0.370
Length
468 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGSKAAAA VAVVLAFLLF AIASTAAAAA PDMSIISYNS AHAVRGLERT EAEVRAMYDH WLARHGRSYN ALGEYDRRFR AFWDNLRLVD AHNADADARG
101: FRLGMNRFAD LTNDEFRAAY LGAIPSSQGR HAVGGRYLHD GAETLPESVD WREKGAVAPV KNQGQCGSCW AFSAVGAVEG INKIVTGDLV TLSEQELVEC
201: ARNGQNSGCN GGMMEDAFDF IARNGGIDTE EDYPYTAKDG RCDHAKRSRT AVSIDGFELV PENDELSLKK AVAHQPVSVG IEAGGPEFQL YESGVFTGRC
301: GTELDHGVVA VGYGTDNGRD YWSVRNSWGP DWGEGGYIRM ERNVTARAGK CGIAMMASYP VKNGPNPSPK PDPPKPVACD RHSKCPAGST CCCTHGVRKT
401: CFVWGCCPAK GATCCKDGAT CCPSDYPVCN AENRTCSKSK NSPYNVDALI RTPAKRSRTT TITQLVDF
101: FRLGMNRFAD LTNDEFRAAY LGAIPSSQGR HAVGGRYLHD GAETLPESVD WREKGAVAPV KNQGQCGSCW AFSAVGAVEG INKIVTGDLV TLSEQELVEC
201: ARNGQNSGCN GGMMEDAFDF IARNGGIDTE EDYPYTAKDG RCDHAKRSRT AVSIDGFELV PENDELSLKK AVAHQPVSVG IEAGGPEFQL YESGVFTGRC
301: GTELDHGVVA VGYGTDNGRD YWSVRNSWGP DWGEGGYIRM ERNVTARAGK CGIAMMASYP VKNGPNPSPK PDPPKPVACD RHSKCPAGST CCCTHGVRKT
401: CFVWGCCPAK GATCCKDGAT CCPSDYPVCN AENRTCSKSK NSPYNVDALI RTPAKRSRTT TITQLVDF
001: MAATPIRVIV SALVILSVLL LSSSLGVATE TEIERNETEV RLMYEQWLVE NRKNYNGLGE KERRFKIFKD NLKFVDEHNS VPDRTFEVGL TRFADLTNEE
101: FRAIYLRKKM ERTKDSVKTE RYLYKEGDVL PDEVDWRANG AVVSVKDQGN CGSCWAFSAV GAVEGINQIT TGELISLSEQ ELVDCDRGFV NAGCDGGIMN
201: YAFEFIMKNG GIETDQDYPY NANDLGLCNA DKNNNTRVVT IDGYEDVPRD DEKSLKKAVA HQPVSVAIEA SSQAFQLYKS GVMTGTCGIS LDHGVVVVGY
301: GSTSGEDYWI IRNSWGLNWG DSGYVKLQRN IDDPFGKCGI AMMPSYPTKS SFPSSFDLLS EI
101: FRAIYLRKKM ERTKDSVKTE RYLYKEGDVL PDEVDWRANG AVVSVKDQGN CGSCWAFSAV GAVEGINQIT TGELISLSEQ ELVDCDRGFV NAGCDGGIMN
201: YAFEFIMKNG GIETDQDYPY NANDLGLCNA DKNNNTRVVT IDGYEDVPRD DEKSLKKAVA HQPVSVAIEA SSQAFQLYKS GVMTGTCGIS LDHGVVVVGY
301: GSTSGEDYWI IRNSWGLNWG DSGYVKLQRN IDDPFGKCGI AMMPSYPTKS SFPSSFDLLS EI
Arabidopsis Description
RDL2Probable cysteine protease RDL2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT77]
SUBAcon: [endoplasmic reticulum,vacuole]
SUBAcon: [endoplasmic reticulum,vacuole]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.