Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU4Hr1G049880.2 | Barley | mitochondrion, plastid | 100.0 | 62.12 |
| Zm00001d028108_P001 | Maize | mitochondrion | 38.46 | 50.0 |
| Zm00001d041417_P001 | Maize | endoplasmic reticulum | 36.81 | 30.32 |
| Zm00001d016017_P002 | Maize | cytosol | 39.01 | 27.84 |
| Zm00001d035557_P001 | Maize | mitochondrion | 51.65 | 27.41 |
| HORVU4Hr1G043910.1 | Barley | extracellular | 84.07 | 27.32 |
| Solyc06g060290.2.1 | Tomato | plastid | 55.49 | 23.06 |
| GSMUA_Achr1P16970_001 | Banana | endoplasmic reticulum | 61.54 | 22.09 |
| GSMUA_Achr3P22070_001 | Banana | endoplasmic reticulum | 58.24 | 20.62 |
| Bra012293.1-P | Field mustard | endoplasmic reticulum | 55.49 | 20.36 |
| Bra016405.1-P | Field mustard | endoplasmic reticulum | 55.49 | 20.16 |
| PGSC0003DMT400045299 | Potato | endoplasmic reticulum | 54.95 | 20.12 |
| AT1G77510.1 | Thale cress | endoplasmic reticulum | 54.4 | 19.49 |
| Bra017948.1-P | Field mustard | endoplasmic reticulum | 53.3 | 19.48 |
| PGSC0003DMT400010624 | Potato | endoplasmic reticulum | 52.2 | 19.23 |
| AT1G21750.1 | Thale cress | endoplasmic reticulum | 52.75 | 19.16 |
| Bra015665.1-P | Field mustard | endoplasmic reticulum | 53.3 | 19.06 |
| Bra008311.1-P | Field mustard | endoplasmic reticulum | 53.3 | 18.98 |
| Solyc06g005940.2.1 | Tomato | nucleus, plastid | 51.65 | 18.84 |
| Solyc05g056400.2.1 | Tomato | plastid | 50.55 | 17.39 |
| HORVU2Hr1G076360.1 | Barley | endoplasmic reticulum | 46.15 | 16.15 |
| PGSC0003DMT400036388 | Potato | endoplasmic reticulum | 42.31 | 15.75 |
| Solyc05g018700.2.1 | Tomato | plastid | 41.21 | 15.12 |
| HORVU4Hr1G034020.1 | Barley | cytosol | 8.24 | 11.45 |
| HORVU4Hr1G048980.2 | Barley | cytosol | 15.38 | 9.59 |
| HORVU6Hr1G001640.1 | Barley | endoplasmic reticulum | 14.29 | 9.03 |
| HORVU5Hr1G114600.1 | Barley | endoplasmic reticulum | 13.74 | 8.5 |
| HORVU2Hr1G075810.1 | Barley | endoplasmic reticulum | 19.23 | 8.45 |
| HORVU6Hr1G001800.2 | Barley | endoplasmic reticulum | 13.74 | 8.04 |
| HORVU6Hr1G059710.1 | Barley | endoplasmic reticulum | 19.23 | 7.81 |
| HORVU4Hr1G056730.1 | Barley | endoplasmic reticulum | 5.49 | 6.1 |
| HORVU6Hr1G001700.1 | Barley | endoplasmic reticulum, plastid | 19.78 | 5.67 |
| HORVU7Hr1G026030.1 | Barley | cytosol | 16.48 | 5.12 |
| HORVU5Hr1G067570.1 | Barley | plasma membrane | 10.99 | 3.86 |
| HORVU1Hr1G022810.1 | Barley | endoplasmic reticulum | 8.24 | 3.72 |
| PGSC0003DMT400060279 | Potato | cytosol | 1.1 | 1.1 |
Protein Annotations
| EnsemblPlants:HORVU4Hr1G049820.1 | EnsemblPlantsGene:HORVU4Hr1G049820 | Gene3D:3.40.30.10 | InterPro:Thioredoxin-like_sf | PANTHER:PTHR18929 | PANTHER:PTHR18929:SF186 |
| SUPFAM:SSF52833 | UniParc:UPI000B4661C6 | UniProt:A0A287P058 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr4H:-:405662004..405664449
Molecular Weight (calculated)
20706.0 Da
IEP (calculated)
9.792
GRAVY (calculated)
-0.391
Length
182 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKLLAGKYE VHGFPTLKIL RNRGKNIQEY KGLREAKGII EYSKKQVGPA SKEIKAPKDA TYLEDNKIHI VGVFMEFSGT GFTNFLEVAE KLRSDYDFGH
101: IMHANHLPRG DAAVERPLVR LFKTFNELVV DSKDFVVSAL EKLIDASSTL KVVTFDKNPD NHPYLLKFFQ SNAPKMRCHT YA
101: IMHANHLPRG DAAVERPLVR LFKTFNELVV DSKDFVVSAL EKLIDASSTL KVVTFDKNPD NHPYLLKFFQ SNAPKMRCHT YA
001: MAMRGFTLFS ILVLSLCASS IRSEETETKE FVLTLDHTNF TDTINKHDFI VVEFYAPWCG HCKQLAPEYE KAASALSSNV PPVVLAKIDA SEETNREFAT
101: QYEVQGFPTI KIFRNGGKAV QEYNGPREAE GIVTYLKKQS GPASAEIKSA DDASEVVSDK KVVVVGIFPK LSGSEFDSFM AIAEKLRSEL DFAHTSDAKL
201: LPRGESSVTG PVVRLFKPFD EQFVDSKDFD GEALEKFVKE SSIPLITVFD KDPNNHPYVI KFFESTNTKA MLFINFTGEG AESLKSKYRE VATSNKGQGL
301: SFLLGDAENS QGAFQYFGLE ESQVPLIIIQ TADDKKYLKT NVEVDQIESW VKDFKDGKIA PHKKSQPIPA ENNEPVKVVV SDSLDDIVLN SGKNVLLEFY
401: APWCGHCQKL APILDEVAVS YQSDSSVVIA KLDATANDFP KDTFDVKGFP TIYFKSASGN VVVYEGDRTK EDFISFVDKN KDTVGEPKKE EETTEEVKDE
501: L
101: QYEVQGFPTI KIFRNGGKAV QEYNGPREAE GIVTYLKKQS GPASAEIKSA DDASEVVSDK KVVVVGIFPK LSGSEFDSFM AIAEKLRSEL DFAHTSDAKL
201: LPRGESSVTG PVVRLFKPFD EQFVDSKDFD GEALEKFVKE SSIPLITVFD KDPNNHPYVI KFFESTNTKA MLFINFTGEG AESLKSKYRE VATSNKGQGL
301: SFLLGDAENS QGAFQYFGLE ESQVPLIIIQ TADDKKYLKT NVEVDQIESW VKDFKDGKIA PHKKSQPIPA ENNEPVKVVV SDSLDDIVLN SGKNVLLEFY
401: APWCGHCQKL APILDEVAVS YQSDSSVVIA KLDATANDFP KDTFDVKGFP TIYFKSASGN VVVYEGDRTK EDFISFVDKN KDTVGEPKKE EETTEEVKDE
501: L
Arabidopsis Description
PDIL1-1Protein disulfide isomerase-like 1-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9XI01]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.