Factsheet for Solyc05g056400.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 5
endoplasmic reticulum 9
vacuole 5
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	endoplasmic reticulum
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plasma membrane
YLoc:	endoplasmic reticulum

plastid: 20363867
plastid: 22908117
plastid: 26371478
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc04g078540.2.1
Solyc12g088670.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G21750.1	Solyc04g078540.2.1	AT1G47128.1	18676877
AT1G21750.1	Solyc12g088670.1.1	AT1G47128.1	18676877
AT1G21750.1	Solyc04g078540.2.1	AT5G43060.1	18676877
AT1G21750.1	Solyc12g088670.1.1	AT5G43060.1	18676877

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060279	Potato	cytosol	33.65	97.8
Solyc06g005940.2.1	Tomato	nucleus, plastid	62.76	66.53
Solyc06g060290.2.1	Tomato	plastid	50.85	61.42
CDY38821	Canola	cytosol, endoplasmic reticulum	57.66	61.0
Bra012293.1-P	Field mustard	endoplasmic reticulum	56.71	60.48
CDY01314	Canola	endoplasmic reticulum	56.71	60.48
AT1G21750.1	Thale cress	endoplasmic reticulum	57.28	60.48
Bra016405.1-P	Field mustard	endoplasmic reticulum	57.28	60.48
CDX96575	Canola	endoplasmic reticulum	57.28	60.48
CDY00400	Canola	endoplasmic reticulum	57.28	60.12
CDY04673	Canola	endoplasmic reticulum	55.2	58.63
CDY08176	Canola	endoplasmic reticulum	55.2	58.63
Bra017948.1-P	Field mustard	endoplasmic reticulum	55.2	58.63
GSMUA_Achr1P16970_001	Banana	endoplasmic reticulum	56.14	58.58
Zm00001d028108_P001	Maize	mitochondrion	15.31	57.86
AT1G77510.1	Thale cress	endoplasmic reticulum	55.2	57.48
CDX87514	Canola	endoplasmic reticulum	55.2	57.37
CDX88376	Canola	cytosol, endoplasmic reticulum	55.2	57.14
Bra015665.1-P	Field mustard	endoplasmic reticulum	54.82	56.97
CDY40898	Canola	endoplasmic reticulum	54.82	56.86
CDY38344	Canola	endoplasmic reticulum	54.63	56.56
Bra008311.1-P	Field mustard	endoplasmic reticulum	54.63	56.56
Solyc05g018700.2.1	Tomato	plastid	51.42	54.84
GSMUA_Achr3P22070_001	Banana	endoplasmic reticulum	52.93	54.47
Os11t0199200-01	Rice	extracellular, plasma membrane	52.55	54.3
TraesCS4A01G214200.2	Wheat	plastid	51.8	53.2
TraesCS4D01G098400.1	Wheat	golgi	51.42	52.82
TraesCS4B01G101800.3	Wheat	golgi	51.04	52.73
KXG28001	Sorghum	endoplasmic reticulum	49.34	50.68
HORVU4Hr1G049820.1	Barley	cytosol	17.39	50.55
HORVU4Hr1G043910.1	Barley	extracellular	51.42	48.57
KXG26345	Sorghum	endoplasmic reticulum	47.26	48.26
Zm00001d049099_P005	Maize	endoplasmic reticulum	48.02	47.74
TraesCS2A01G306500.1	Wheat	endoplasmic reticulum	46.31	47.39
TraesCS2B01G323200.1	Wheat	endoplasmic reticulum	46.31	47.3
TraesCS2D01G305000.1	Wheat	endoplasmic reticulum	46.12	47.2
Zm00001d007301_P001	Maize	endoplasmic reticulum	48.77	46.99
Os02t0554900-01	Rice	plastid	47.64	46.24
Os04t0436300-01	Rice	endoplasmic reticulum	25.52	46.08
HORVU4Hr1G049880.2	Barley	mitochondrion, plastid	21.93	39.59
Zm00001d016017_P002	Maize	cytosol	18.71	38.82
Zm00001d041417_P001	Maize	endoplasmic reticulum	15.69	37.56
Zm00001d035557_P001	Maize	mitochondrion	22.87	35.28
Solyc04g049450.2.1	Tomato	endoplasmic reticulum, nucleus, plastid	29.87	28.06
Solyc11g069400.1.1	Tomato	plastid	30.62	27.93
HORVU2Hr1G076360.1	Barley	endoplasmic reticulum	25.9	26.35
Solyc01g100320.2.1	Tomato	extracellular	17.39	25.63
Solyc11g069690.1.1	Tomato	extracellular	5.86	24.8
Solyc06g075210.2.1	Tomato	unclear	25.14	24.23
Solyc07g049450.2.1	Tomato	nucleus	17.58	21.53
Solyc11g019920.1.1	Tomato	plastid, unclear	17.58	21.38
Solyc03g120720.2.1	Tomato	plastid	21.74	21.38
Solyc06g065320.2.1	Tomato	endoplasmic reticulum	17.77	21.27

Protein Annotations

Gene3D:3.40.30.10	MapMan:50.5.3	InterPro:Disulphide_isomerase	GO:GO:0003674	GO:GO:0003756	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0006457
GO:GO:0006950	GO:GO:0008150	GO:GO:0009987	GO:GO:0016853	GO:GO:0019725	GO:GO:0034976
GO:GO:0045454	InterPro:IPR013766	UniProt:K4C2W4	PFAM:PF00085	PFAM:PF13848	PRINTS:PR00421
ScanProsite:PS00194	PFscan:PS51352	PANTHER:PTHR18929	PANTHER:PTHR18929:SF186	InterPro:Prot_disulphide_isomerase	SUPFAM:SSF52833
SignalP:SignalP-noTM	EnsemblPlantsGene:Solyc05g056400.2	EnsemblPlants:Solyc05g056400.2.1	TIGRFAMs:TIGR01126	TIGRFAMs:TIGR01130	InterPro:Thioredoxin-like_sf
InterPro:Thioredoxin_CS	InterPro:Thioredoxin_domain	UniParc:UPI0002765710	SEG:seg	:	:

Description

Protein disulfide-isomerase [Source:UniProtKB/TrEMBL;Acc:K4C2W4]

Coordinates

chr5:+:65715197..65718235

Molecular Weight (calculated)

59013.5 Da

IEP (calculated)

4.714

GRAVY (calculated)

-0.114

Length

529 amino acids

Sequence
(BLAST)

001: MKMEWSGVLV VLCVVFSVCV AEEEKEYVLT LDHTNFTDTI TKYNFIVVEF YAPWCGHCKK LAPEYEKAAS ILSSHDPQIV LAKLDASDDA SRELAIKYEL
101: QGFPTIKILR DGGKNVQEYK GPRDADGIVA YLKKQTGPAS AEIKSKEDVA SLIDEKKINV VGVFPELSGE KFDKFITLAE KLRADYAFAH TVDAKLLPRG
201: EPVDKPTIRL LKPFDELFVD FEDFDVDAAE KFIAEATVPI VTIFDQEPEN QVYVSKFFKT PNAKVLIFVN FSTEFDAFQS KYKDVAVSYK GDGLSFLLGD
301: VEAGAGVFKY FGLEPEQAPV IIIMVNEGEK YISTHVQPDV LASWLKDYKD GKLKQFFKSE PIPEVNNEPV KVVVRDTLRD LVLNSGKNVL LEFYAPWCGH
401: CKALAPILDE VALSFEKDSD VLIAKLDATA NDIPKGEFDI KGFPTLYFKS ASGNISQYEG DRTKEAIIEF IEKNRDKPAA HHSESSVKAD STKPESVTTD
501: SAKDEFFGII CLHGGLKFCC GFAVLCLMF

Best Arabidopsis Sequence Match ( AT1G77510.1 )
(BLAST)

001: MAFKGFACFS ILLLLSLFVS SIRSEETKEF VLTLDHSNFT ETISKHDFIV VEFYAPWCGH CQKLAPEYEK AASELSSHNP PLALAKIDAS EEANKEFANE
101: YKIQGFPTLK ILRNGGKSVQ DYNGPREAEG IVTYLKKQSG PASVEIKSAD SATEVVGEKN VVAVGVFPKL SGDEFDSFMA LAEKLRADYD FAHTLDAKFL
201: PRGESVEGPA VRLFKPFDEL FVDSKDFNGE ALEKFVKESS IPLVTVFDSD PNNHPYVAKF FESPATKAMM FVNFTGATAE ALKSKYREVA TSNKDQSLAF
301: LVGDAESSQG AFQYFGLEES QVPLIIIQTP DNKKYLKVNV EVDQIESWFK DFQDGKVAVH KKSQPIPAEN NEPVKVVVAE SLDDIVFKSG KNVLIEFYAP
401: WCGHCQKLAP ILDEVALSFQ NDPSVIIAKL DATANDIPSD TFDVKGFPTI YFRSASGNVV VYEGDRTKED FINFVEKNSE KKPTSHGEES TKSEEPKKTE
501: ETAAKDEL

Arabidopsis Description

PDIL1-2Protein disulfide isomerase-like 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRG3]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.