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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • mitochondrion 1
  • endoplasmic reticulum 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:endoplasmic reticulum, mitochondrion
iPSORT:mitochondrion
MultiLoc:endoplasmic reticulum
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU2Hr1G076360.1
HORVU2Hr1G113460.2
HORVU4Hr1G043910.1
HORVU4Hr1G049820.1
HORVU4Hr1G049880.2

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G19390.1 HORVU2Hr1G076360.1 AT1G21750.1 18676877
AT3G19390.1 HORVU4Hr1G043910.1 AT1G21750.1 18676877
AT3G19390.1 HORVU4Hr1G049820.1 AT1G21750.1 18676877
AT3G19390.1 HORVU4Hr1G049880.2 AT1G21750.1 18676877
AT3G19390.1 HORVU2Hr1G113460.2 AT1G47128.1 26016527
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS2B01G576300.1 Wheat unclear 86.4 92.11
TraesCS2D01G546600.1 Wheat plasma membrane, vacuole 86.6 91.16
TraesCS2A01G545700.1 Wheat unclear 85.8 90.89
Os04t0670200-02 Rice extracellular 78.6 79.88
EES13064 Sorghum extracellular, plasma membrane, vacuole 72.8 77.94
Zm00001d001900_P002 Maize endoplasmic reticulum, extracellular, plasma membrane 71.6 76.99
Zm00001d026577_P001 Maize extracellular, golgi, plasma membrane 72.0 76.6
HORVU7Hr1G055310.1 Barley extracellular 61.0 65.31
VIT_03s0180g00010.t01 Wine grape extracellular 51.8 60.8
HORVU2Hr1G121150.1 Barley endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole 57.0 58.64
VIT_07s0031g00050.t01 Wine grape nucleus 38.4 58.18
Solyc01g107760.2.1 Tomato extracellular 53.6 57.02
PGSC0003DMT400066566 Potato endoplasmic reticulum 53.4 56.81
CDX95457 Canola endoplasmic reticulum, extracellular, vacuole 50.2 55.9
CDY50157 Canola endoplasmic reticulum, extracellular, vacuole 49.8 55.46
HORVU2Hr1G113460.2 Barley plasma membrane 54.2 55.42
Solyc02g093040.2.1 Tomato endoplasmic reticulum, extracellular, vacuole 39.8 54.82
AT3G19390.1 Thale cress endoplasmic reticulum 49.4 54.65
CDY46179 Canola endoplasmic reticulum 49.0 54.44
Bra022418.1-P Field mustard endoplasmic reticulum 49.0 54.44
PGSC0003DMT400064314 Potato endoplasmic reticulum, extracellular, vacuole 39.2 54.29
PGSC0003DMT400053921 Potato extracellular 39.4 54.12
Bra038206.1-P Field mustard extracellular, plasma membrane, vacuole 48.4 53.78
KRH57968 Soybean endoplasmic reticulum 38.8 53.01
CDY50154 Canola endoplasmic reticulum 45.6 51.82
Bra038208.1-P Field mustard endoplasmic reticulum 45.6 51.7
CDX95451 Canola endoplasmic reticulum, extracellular, vacuole 45.4 51.59
AT3G19400.1 Thale cress endoplasmic reticulum, vacuole 37.2 51.38
KRH07581 Soybean endoplasmic reticulum 37.6 51.37
Bra010592.1-P Field mustard extracellular, golgi, vacuole 38.4 51.34
CDY22445 Canola vacuole 38.4 51.34
KRH04538 Soybean extracellular 37.4 51.09
AT4G36880.1 Thale cress vacuole 38.4 51.06
Solyc03g044230.1.1 Tomato extracellular 38.6 50.92
CDX75633 Canola vacuole 38.0 50.8
CDX69285 Canola endoplasmic reticulum, vacuole 37.4 50.0
CDY44047 Canola vacuole 38.2 49.74
Bra011746.1-P Field mustard vacuole 37.0 49.47
CDX99227 Canola endoplasmic reticulum 48.4 47.73
HORVU2Hr1G009150.1 Barley extracellular, vacuole 31.4 46.04
HORVU4Hr1G006270.1 Barley extracellular, vacuole 31.4 45.91
HORVU4Hr1G006280.2 Barley extracellular 31.4 45.77
HORVU2Hr1G009640.1 Barley extracellular 31.0 45.59
HORVU4Hr1G006310.1 Barley endoplasmic reticulum, extracellular 31.4 45.51
HORVU2Hr1G009610.1 Barley extracellular 30.6 45.0
HORVU1Hr1G060040.1 Barley endoplasmic reticulum, extracellular 30.6 44.87
HORVU7Hr1G044230.3 Barley extracellular 30.0 44.12
HORVU6Hr1G084520.5 Barley extracellular 29.8 43.95
HORVU2Hr1G009510.1 Barley cytosol 30.0 43.73
HORVU3Hr1G088270.2 Barley extracellular 32.2 43.63
HORVU6Hr1G083420.1 Barley extracellular 29.6 43.4
HORVU3Hr1G091800.1 Barley endoplasmic reticulum 32.6 43.01
HORVU3Hr1G088080.2 Barley endoplasmic reticulum, extracellular 32.0 42.78
HORVU5Hr1G095580.1 Barley endoplasmic reticulum, extracellular 29.8 42.69
HORVU3Hr1G091920.2 Barley endoplasmic reticulum 31.8 42.63
HORVU3Hr1G091790.1 Barley extracellular 31.8 42.63
HORVU6Hr1G070320.2 Barley endoplasmic reticulum, extracellular 30.8 42.31
HORVU2Hr1G023980.2 Barley vacuole 27.2 39.77
HORVU1Hr1G075530.3 Barley plastid 37.8 37.28
HORVU1Hr1G003940.6 Barley endoplasmic reticulum 27.4 37.13
Protein Annotations
Gene3D:3.10.20.500Gene3D:3.90.70.10MapMan:50.3.4UniProt:A0A287JPW5GO:GO:0003674GO:GO:0003824
GO:GO:0005575GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0008234
GO:GO:0016020GO:GO:0016021GO:GO:0016787GO:GO:0019538InterPro:GranulinInterPro:Granulin_sf
EnsemblPlantsGene:HORVU2Hr1G121440EnsemblPlants:HORVU2Hr1G121440.2InterPro:IPR037277PFAM:PF00112PFAM:PF00396PFAM:PF08246
PRINTS:PR00705ScanProsite:PS00139ScanProsite:PS00639ScanProsite:PS00640PANTHER:PTHR12411PANTHER:PTHR12411:SF343
InterPro:Papain_like_cys_pep_sfInterPro:Pept_asp_ASInterPro:Pept_cys_ASInterPro:Pept_his_ASInterPro:Peptidase_C1AInterPro:Peptidase_C1A_C
InterPro:Prot_inhib_I29SMART:SM00277SMART:SM00645SMART:SM00848SUPFAM:SSF54001SUPFAM:SSF57277
TMHMM:TMhelixUniParc:UPI000B468254SEG:seg:::
Description
No Description!
Coordinates
chrchr2H:+:751551470..751555191
Molecular Weight (calculated)
50989.1 Da
IEP (calculated)
5.982
GRAVY (calculated)
-0.284
Length
500 amino acids
Sequence
(BLAST)
001: PHPPKTITEK LEKAPGSISR ATLVYATMAR AAAAILPPLL LLLLAVAXXX XXXXXXIAYN AEHGARGLER TEAEARAVYD LWLAEHGGGX XXXXXXXXXX
101: XXXXXAFWDN LRFVDAHNAR AAAGEEGFRL AMNRFADLTN DEFRAAYLGV KGAAERNRAG RVVGERYRHD GAEELPEAVD WREKGAVAPV KNQGQCGSCW
201: AFSAVSTVES INQIVTGEMV TLSEQELVEC DINGQSSGCN GGLMDDAFEF IIKNGGIDTE DDYPYKAVDG RCDVLRKNAK VVSIDGFEDV PENDEKSLQK
301: AVAHHPVSVA IEAGGREFQL YHSGVFSGRC GTQLDHGVVA VGYGTENGKD YWIVRNSWGP NWGEAGYLRM ERNINVTSGK CGIAMMSSYP TKKGANPPKP
401: APTPPSPPTP PPPVAPDHVC DENFSCPAGS TCCCSFGFRN LCLVWGCCPA EGATCCKDHS SCCPPDYPVC NIRAGTCSAT KNSPLSVKAL KRTLAMRNTA
Best Arabidopsis Sequence Match ( AT1G47128.1 )
(BLAST)
001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
Arabidopsis Description
RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.