Factsheet for TraesCS2B01G576300.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

extracellular 5
golgi 4
plasma membrane 5
endoplasmic reticulum 4
vacuole 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	plasma membrane

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G306500.1
TraesCS2A01G512100.1
TraesCS2B01G323200.1
TraesCS2B01G540100.2
TraesCS2D01G305000.1
TraesCS2D01G513600.1
TraesCS4A01G214200.2
TraesCS4B01G101800.3
TraesCS4D01G098400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G19390.1	TraesCS2A01G306500.1	AT1G21750.1	18676877
AT3G19390.1	TraesCS2B01G323200.1	AT1G21750.1	18676877
AT3G19390.1	TraesCS2D01G305000.1	AT1G21750.1	18676877
AT3G19390.1	TraesCS4A01G214200.2	AT1G21750.1	18676877
AT3G19390.1	TraesCS4B01G101800.3	AT1G21750.1	18676877
AT3G19390.1	TraesCS4D01G098400.1	AT1G21750.1	18676877
AT3G19390.1	TraesCS2A01G512100.1	AT1G47128.1	26016527
AT3G19390.1	TraesCS2B01G540100.2	AT1G47128.1	26016527
AT3G19390.1	TraesCS2D01G513600.1	AT1G47128.1	26016527

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2A01G545700.1	Wheat	unclear	96.8	96.19
TraesCS2D01G546600.1	Wheat	plasma membrane, vacuole	97.01	95.79
HORVU2Hr1G121440.2	Barley	endoplasmic reticulum	92.11	86.4
EES13064	Sorghum	extracellular, plasma membrane, vacuole	80.17	80.51
Zm00001d001900_P002	Maize	endoplasmic reticulum, extracellular, plasma membrane	79.53	80.22
Zm00001d026577_P001	Maize	extracellular, golgi, plasma membrane	79.74	79.57
Os04t0670200-02	Rice	extracellular	83.37	79.47
TraesCS7B01G162200.1	Wheat	endoplasmic reticulum	66.1	67.25
TraesCS2B01G577300.1	Wheat	extracellular, golgi	64.18	64.18
TraesCS2B01G577500.1	Wheat	endoplasmic reticulum	63.54	63.68
VIT_03s0180g00010.t01	Wine grape	extracellular	57.14	62.91
TraesCS2B01G540100.2	Wheat	golgi	60.55	61.34
VIT_07s0031g00050.t01	Wine grape	nucleus	42.22	60.0
Solyc01g107760.2.1	Tomato	extracellular	59.7	59.57
PGSC0003DMT400066566	Potato	endoplasmic reticulum	59.49	59.36
CDX95457	Canola	endoplasmic reticulum, extracellular, vacuole	55.22	57.68
CDY50157	Canola	endoplasmic reticulum, extracellular, vacuole	54.8	57.24
Solyc02g093040.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	44.14	57.02
AT3G19390.1	Thale cress	endoplasmic reticulum	54.58	56.64
PGSC0003DMT400064314	Potato	endoplasmic reticulum, extracellular, vacuole	43.5	56.51
PGSC0003DMT400053921	Potato	extracellular	43.71	56.32
CDY46179	Canola	endoplasmic reticulum	53.94	56.22
Bra022418.1-P	Field mustard	endoplasmic reticulum	53.94	56.22
TraesCS6B01G379900.1	Wheat	cytosol, mitochondrion, nucleus	17.48	55.41
Bra038206.1-P	Field mustard	extracellular, plasma membrane, vacuole	52.88	55.11
TraesCS6B01G378700.1	Wheat	cytosol, mitochondrion, nucleus	17.27	54.73
KRH57968	Soybean	endoplasmic reticulum	42.43	54.37
AT4G36880.1	Thale cress	vacuole	43.28	53.99
CDY22445	Canola	vacuole	42.86	53.74
Bra010592.1-P	Field mustard	extracellular, golgi, vacuole	42.64	53.48
AT3G19400.1	Thale cress	endoplasmic reticulum, vacuole	41.15	53.31
KRH07581	Soybean	endoplasmic reticulum	41.36	53.01
CDY50154	Canola	endoplasmic reticulum	49.68	52.95
CDX75633	Canola	vacuole	42.22	52.94
Bra038208.1-P	Field mustard	endoplasmic reticulum	49.68	52.83
Solyc03g044230.1.1	Tomato	extracellular	42.64	52.77
KRH04538	Soybean	extracellular	41.15	52.73
CDX95451	Canola	endoplasmic reticulum, extracellular, vacuole	49.47	52.73
CDX69285	Canola	endoplasmic reticulum, vacuole	41.79	52.41
Bra011746.1-P	Field mustard	vacuole	41.36	51.87
CDY44047	Canola	vacuole	42.43	51.82
TraesCS5B01G138300.1	Wheat	endoplasmic reticulum, golgi, vacuole	37.53	49.44
TraesCS1B01G033200.1	Wheat	endoplasmic reticulum, extracellular, golgi	37.1	49.43
CDX99227	Canola	endoplasmic reticulum	53.3	49.31
TraesCS4B01G039600.1	Wheat	extracellular	34.54	47.51
TraesCS6B01G182100.1	Wheat	endoplasmic reticulum, extracellular	34.54	47.37
TraesCS3B01G380400.1	Wheat	golgi	36.67	47.25
TraesCS4B01G039700.1	Wheat	extracellular	34.33	47.21
TraesCS4B01G039800.1	Wheat	extracellular	34.33	47.21
TraesCS6B01G182200.1	Wheat	extracellular	34.33	47.08
TraesCS2B01G067900.1	Wheat	extracellular	34.12	47.06
TraesCS4B01G039900.1	Wheat	endoplasmic reticulum, extracellular	34.12	46.92
TraesCS1B01G236800.1	Wheat	extracellular	33.9	46.9
TraesCS2B01G067800.1	Wheat	extracellular	33.9	46.76
TraesCS2B01G067700.1	Wheat	extracellular	33.9	46.76
TraesCS4B01G039500.1	Wheat	extracellular	33.9	46.63
TraesCS4B01G040000.1	Wheat	endoplasmic reticulum, extracellular	33.48	46.04
TraesCS2B01G068000.1	Wheat	extracellular, golgi, plastid	28.36	45.86
TraesCS3B01G378600.1	Wheat	endoplasmic reticulum	36.03	45.8
TraesCS6B01G379000.1	Wheat	extracellular	33.05	45.72
TraesCS6B01G378900.1	Wheat	extracellular	33.05	45.72
TraesCS5B01G072400.1	Wheat	extracellular	32.84	45.7
TraesCS6B01G378400.1	Wheat	extracellular	32.62	45.13
TraesCS6B01G379300.1	Wheat	extracellular	32.62	45.13
TraesCS5B01G523100.1	Wheat	extracellular	32.62	45.0
TraesCS3B01G447500.1	Wheat	extracellular, vacuole	35.39	44.74
TraesCS7B01G292000.1	Wheat	cytosol, extracellular, nucleus	29.21	44.63
TraesCS6B01G379200.1	Wheat	extracellular	32.2	44.54
TraesCS6B01G380000.1	Wheat	extracellular	32.2	44.54
TraesCS6B01G380200.1	Wheat	extracellular	32.2	44.54
TraesCS6B01G308300.1	Wheat	extracellular, vacuole	33.9	44.29
TraesCS4B01G076200.1	Wheat	endoplasmic reticulum	37.74	44.25
TraesCS7B01G387600.1	Wheat	extracellular	31.98	44.12
TraesCS3B01G447400.1	Wheat	endoplasmic reticulum	35.18	44.12
TraesCS1B01G338500.1	Wheat	endoplasmic reticulum, unclear	43.07	43.72

Protein Annotations

Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	GO:GO:0003674	GO:GO:0003824	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008234	GO:GO:0016787	GO:GO:0019538	InterPro:Granulin
InterPro:Granulin_sf	InterPro:IPR037277	PFAM:PF00112	PFAM:PF00396	PFAM:PF08246	PRINTS:PR00705
ScanProsite:PS00139	ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF343	InterPro:Papain_like_cys_pep_sf
InterPro:Pept_asp_AS	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29
SMART:SM00277	SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SUPFAM:SSF57277	SignalP:SignalP-noTM
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS2B01G576300	EnsemblPlants:TraesCS2B01G576300.1	TIGR:cd02248	SEG:seg	:

Description

No Description!

Coordinates

chr2B:+:765276416..765279577

Molecular Weight (calculated)

50419.2 Da

IEP (calculated)

5.684

GRAVY (calculated)

-0.341

Length

469 amino acids

Sequence
(BLAST)

001: MARAAAAGLA LLLLAVAAVA SAADMSIIAY NAEHGARGLE RTEAEARAVY DLWLAEHGGG SYPNANSIPE RERRFRAFWD NLRFVDAHNA RAAAGEEGFR
101: LAMNRFADLT NDEFRAAYLG VKGQRARPGR VVGERYRHDG AEELPEAVDW REKGAVAPVK NQGQCGSCWA FSAISTVESI NQIVTGEMVT LSEQELVECD
201: TNGQSSGCNG GLMDDAFEFI IKNGGIDTED DYPYKAIDGR CDVLRKNAKV VSIDGFEDVP ENDEKSLQKA VAHQPVSVAI EAGGREFQLY HSGVFSGRCG
301: TQLDHGVVAV GYGTENGKDY WIVRNSWGPN WGEAGYLRME RNINVTSGKC GIAMMSSYPT KKGANPPKPA PTPPSPPTPP PPVAPDHVCD ENFSCPAGST
401: CCCSFGFRNL CLVWGCCPAE GATCCKDHSS CCPPDYPVCN VRAGTCSATK NSPLSVKALK RTLAMRNTA

Best Arabidopsis Sequence Match ( AT5G43060.1 )
(BLAST)

001: MGFLKLSPMI LLLAMIGVSY AMDMSIISYD ENHHITTETS RSDSEVERIY EAWMVEHGKK KMNQNGLGAE KDQRFEIFKD NLRFIDEHNT KNLSYKLGLT
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA

Arabidopsis Description

RD21BProbable cysteine protease RD21B [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.