Factsheet for TraesCS1B01G338500.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, unclear

Predictor Summary:

extracellular 4
endoplasmic reticulum 7
vacuole 4
plasma membrane 4
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, unclear
Any Predictor:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	endoplasmic reticulum

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G325400.1	Wheat	extracellular	94.59	96.47
TraesCS1D01G327000.1	Wheat	extracellular	94.16	95.81
Zm00001d038650_P001	Maize	extracellular	79.87	80.22
HORVU1Hr1G075530.3	Barley	plastid	87.66	79.88
Os05t0508300-01	Rice	plasma membrane	77.49	79.56
EES18460	Sorghum	endoplasmic reticulum	79.22	79.22
GSMUA_Achr4P17710_001	Banana	endoplasmic reticulum, extracellular	62.55	65.68
PGSC0003DMT400009624	Potato	extracellular	56.71	59.68
VIT_18s0001g13270.t01	Wine grape	extracellular	56.28	59.63
Bra019982.1-P	Field mustard	extracellular, golgi	56.71	59.14
CDX94938	Canola	extracellular, vacuole	56.06	58.6
AT1G09850.1	Thale cress	endoplasmic reticulum	55.41	58.58
CDX93470	Canola	plasma membrane	56.06	58.47
KRH61098	Soybean	endoplasmic reticulum, extracellular, plasma membrane	54.76	57.63
TraesCS1B01G033200.1	Wheat	endoplasmic reticulum, extracellular, golgi	35.06	46.02
TraesCS5B01G138300.1	Wheat	endoplasmic reticulum, golgi, vacuole	33.98	44.1
TraesCS6B01G379900.1	Wheat	cytosol, mitochondrion, nucleus	14.07	43.92
TraesCS3B01G380400.1	Wheat	golgi	34.42	43.68
TraesCS2B01G540100.2	Wheat	golgi	43.72	43.63
TraesCS6B01G378700.1	Wheat	cytosol, mitochondrion, nucleus	13.85	43.24
TraesCS2B01G576300.1	Wheat	unclear	43.72	43.07
TraesCS3B01G378600.1	Wheat	endoplasmic reticulum	34.2	42.82
TraesCS4B01G039600.1	Wheat	extracellular	30.95	41.94
TraesCS4B01G040000.1	Wheat	endoplasmic reticulum, extracellular	30.74	41.64
TraesCS4B01G039800.1	Wheat	extracellular	30.74	41.64
TraesCS4B01G039700.1	Wheat	extracellular	30.74	41.64
TraesCS4B01G039500.1	Wheat	extracellular	30.74	41.64
TraesCS1B01G236800.1	Wheat	extracellular	30.52	41.59
TraesCS6B01G182100.1	Wheat	endoplasmic reticulum, extracellular	30.74	41.52
TraesCS7B01G162200.1	Wheat	endoplasmic reticulum	41.34	41.43
TraesCS2B01G577300.1	Wheat	extracellular, golgi	41.99	41.36
TraesCS4B01G039900.1	Wheat	endoplasmic reticulum, extracellular	30.52	41.35
TraesCS6B01G380000.1	Wheat	extracellular	30.3	41.3
TraesCS5B01G072400.1	Wheat	extracellular	30.09	41.25
TraesCS3B01G447500.1	Wheat	extracellular, vacuole	33.12	41.24
TraesCS6B01G308300.1	Wheat	extracellular, vacuole	32.03	41.23
TraesCS2B01G577500.1	Wheat	endoplasmic reticulum	41.56	41.03
TraesCS6B01G182200.1	Wheat	extracellular	30.3	40.94
TraesCS2B01G067700.1	Wheat	extracellular	30.09	40.88
TraesCS2B01G067900.1	Wheat	extracellular	30.09	40.88
TraesCS2B01G067800.1	Wheat	extracellular	30.09	40.88
TraesCS3B01G447400.1	Wheat	endoplasmic reticulum	32.9	40.64
TraesCS5B01G523100.1	Wheat	extracellular	29.87	40.59
TraesCS6B01G379300.1	Wheat	extracellular	29.65	40.41
TraesCS6B01G378900.1	Wheat	extracellular	29.44	40.12
TraesCS6B01G379000.1	Wheat	extracellular	29.44	40.12
TraesCS6B01G380200.1	Wheat	extracellular	29.44	40.12
TraesCS6B01G378400.1	Wheat	extracellular	29.22	39.82
TraesCS6B01G379200.1	Wheat	extracellular	29.22	39.82
TraesCS2B01G068000.1	Wheat	extracellular, golgi, plastid	24.89	39.66
TraesCS7B01G387600.1	Wheat	extracellular	29.0	39.41
TraesCS4B01G076200.1	Wheat	endoplasmic reticulum	33.98	39.25
TraesCS7B01G292000.1	Wheat	cytosol, extracellular, nucleus	25.97	39.09
Solyc04g080880.2.1	Tomato	extracellular	56.71	31.01

Protein Annotations

Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	GO:GO:0003674	GO:GO:0003824	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008234	GO:GO:0016787	GO:GO:0019538	InterPro:Granulin
InterPro:Granulin_sf	InterPro:IPR037277	PFAM:PF00112	PFAM:PF00396	PFAM:PF08246	PRINTS:PR00705
ScanProsite:PS00139	ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF387	InterPro:Papain_like_cys_pep_sf
InterPro:Pept_asp_AS	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29
SMART:SM00277	SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SUPFAM:SSF57277	SignalP:SignalP-noTM
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS1B01G338500	EnsemblPlants:TraesCS1B01G338500.1	TIGR:cd02248	SEG:seg	:

Description

No Description!

Coordinates

chr1B:+:566601377..566604244

Molecular Weight (calculated)

48727.5 Da

IEP (calculated)

6.230

GRAVY (calculated)

-0.161

Length

462 amino acids

Sequence
(BLAST)

001: MTSEMGLVHC LPLLLLLLSA SAVVAAAGGG EKDVSASDYE ARFEAWCAEH GKAYATPGER AARLAAFAEN AAFVAAHNAG AAANSGAGGS QSYTLALNAF
101: ADLTHDEFRA ARLGRLAVGP VPLGEPRSSG GFEGGVGAVP DALDWRQSGA VTKVKDQGSC GACWSFSATG AMEGINKITT GSLLSLSEQE LIDCDRSYNA
201: GCGGGLMTYA YKFVIKNGGI DTEDDYPFRE ADGTCNKNKL KKHVVTIDGY KEVPPSKEDL LLQAVAQQPI SVGICGSARA FQLYSQGIFD GPCPTSLDHA
301: VLIVGYGSEG GKDYWIVKNS WGERWGMKGY MHMHRNTGSS SGICGINMMA SFPTKTSPNP PPSPGPGPTK CSVFTSCPEG STCCCSWRAL GFCLSWSCCE
401: LDNAVCCSDN RSCCPHDYPI CDTARGRCLK GNGNFSSIEG IKRKQAFSKV PSWNGLLELL DQ

Best Arabidopsis Sequence Match ( AT1G09850.1 )
(BLAST)

001: MSMSSSSFIS LTFFFLLLVS SSSSSDDISE LFDDWCQKHG KTYGSEEERQ QRIQIFKDNH DFVTQHNLIT NATYSLSLNA FADLTHHEFK ASRLGLSVSA
101: PSVIMASKGQ SLGGSVKVPD SVDWRKKGAV TNVKDQGSCG ACWSFSATGA MEGINQIVTG DLISLSEQEL IDCDKSYNAG CNGGLMDYAF EFVIKNHGID
201: TEKDYPYQER DGTCKKDKLK QKVVTIDSYA GVKSNDEKAL MEAVAAQPVS VGICGSERAF QLYSSGIFSG PCSTSLDHAV LIVGYGSQNG VDYWIVKNSW
301: GKSWGMDGFM HMQRNTENSD GVCGINMLAS YPIKTHPNPP PPSPPGPTKC NLFTYCSSGE TCCCARELFG LCFSWKCCEI ESAVCCKDGR HCCPHDYPVC
401: DTTRSLCLKK TGNFTAIKPF WKKNSSKQLG RFEEWVM

Arabidopsis Description

XBCP3At1g09850 [Source:UniProtKB/TrEMBL;Acc:Q0WVJ5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.