Factsheet for Solyc04g080880.2.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 3
vacuole 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 22364583
nucleus: 28394025
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 22364583 doi

P Shah, AL Powell, R Orlando, C Bergmann, G Gutierrez-Sanchez

Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400009624	Potato	extracellular	49.35	94.99
KRH61098	Soybean	endoplasmic reticulum, extracellular, plasma membrane	32.07	61.73
Bra019982.1-P	Field mustard	extracellular, golgi	32.31	61.63
CDX93470	Canola	plasma membrane	32.31	61.63
CDX94938	Canola	extracellular, vacuole	32.19	61.54
AT1G09850.1	Thale cress	endoplasmic reticulum	31.48	60.87
VIT_18s0001g13270.t01	Wine grape	extracellular	30.89	59.86
GSMUA_Achr4P17710_001	Banana	endoplasmic reticulum, extracellular	31.01	59.55
TraesCS1D01G327000.1	Wheat	extracellular	31.12	57.93
TraesCS1A01G325400.1	Wheat	extracellular	30.89	57.62
TraesCS1B01G338500.1	Wheat	endoplasmic reticulum, unclear	31.01	56.71
Zm00001d038650_P001	Maize	extracellular	30.65	56.3
EES18460	Sorghum	endoplasmic reticulum	30.53	55.84
Os05t0508300-01	Rice	plasma membrane	29.35	55.11
Solyc04g082710.2.1	Tomato	cytosol	18.7	51.8
HORVU1Hr1G075530.3	Barley	plastid	30.3	50.49
Solyc02g076970.1.1	Tomato	extracellular	16.57	49.82
Solyc12g094700.1.1	Tomato	extracellular	19.41	49.55
Solyc12g056020.1.1	Tomato	extracellular	18.82	46.63
Solyc12g056010.1.1	Tomato	endoplasmic reticulum	18.7	46.47
Solyc12g056000.1.1	Tomato	endoplasmic reticulum	18.7	46.47
Solyc03g006200.1.1	Tomato	endoplasmic reticulum, extracellular	16.33	45.39
Solyc05g013920.2.1	Tomato	endoplasmic reticulum	18.93	44.69
Solyc03g111730.2.1	Tomato	endoplasmic reticulum	18.93	44.44
Solyc12g088670.1.1	Tomato	endoplasmic reticulum	24.14	43.78
Solyc01g107760.2.1	Tomato	extracellular	24.26	43.62
Solyc02g093040.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	18.58	43.25
Solyc02g076910.2.1	Tomato	extracellular, golgi	17.63	42.45
Solyc04g078540.2.1	Tomato	endoplasmic reticulum	23.31	41.74
Solyc03g044230.1.1	Tomato	extracellular	18.7	41.69
Solyc02g077040.2.1	Tomato	extracellular	16.8	41.16
Solyc02g076980.2.1	Tomato	endoplasmic reticulum, golgi	16.57	40.58
Solyc03g006210.1.1	Tomato	extracellular	15.38	37.57

Protein Annotations

Gene3D:2.60.120.620	Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	GO:GO:0003674	GO:GO:0003824
GO:GO:0004197	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005764	GO:GO:0005773	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987
GO:GO:0016491	GO:GO:0016705	GO:GO:0016787	GO:GO:0019538	GO:GO:0030246	GO:GO:0031418
GO:GO:0046872	GO:GO:0051603	GO:GO:0055114	InterPro:Granulin	InterPro:Granulin_sf	InterPro:IPR005123
InterPro:IPR037277	UniProt:K4BVG7	InterPro:Oxoglu/Fe-dep_dioxygenase	PFAM:PF00112	PFAM:PF00396	PFAM:PF08246
PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639	ScanProsite:PS00640	PFscan:PS51471	PANTHER:PTHR12411
PANTHER:PTHR12411:SF387	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS	InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A
InterPro:Peptidase_C1A_C	InterPro:Pro_4_hyd_alph	InterPro:Prot_inhib_I29	SMART:SM00277	SMART:SM00645	SMART:SM00702
SMART:SM00848	SUPFAM:SSF54001	SUPFAM:SSF57277	EnsemblPlantsGene:Solyc04g080880.2	EnsemblPlants:Solyc04g080880.2.1	UniParc:UPI0002765C86
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4:-:64927998..64936237

Molecular Weight (calculated)

95759.3 Da

IEP (calculated)

6.499

GRAVY (calculated)

-0.441

Length

845 amino acids

Sequence
(BLAST)

001: MEEYNEGSSE EATLRPEPCL EHKAENYDDL EEELEFDPLL YTSLERYLPD NFINLSRLDK VPYLNQILLD YSPPSQRNHR HKHREYRQKI MSNYQPLHKV
101: LYTMHPTNFF VPSFLKAISE NTEQSFRSIM SEPSPGILTF QMLQPRFCDM MLEEVENFEK WIRETKFRIM RPNTMNKYGA VLDDFGLQTM LQEFMEDFIR
201: PISTVLFTEV GGSTLDSHHG FVVEYGTDRD VDLGFHVDDA EVTLNVCLGK QFDGGELFFR GVRCEKHVNT ETQPEEIFDY SHVGGNAILH CGRHRHGARA
301: TTSGRRTNLL IWCRSSVFRE MKKYQTDFSN WCAECKREKE EKRRKNVLLL KSILEAKKPE TWSLSIPNKT SPYFFHSFVS CLYLLQPNPS FTFFSHISNF
401: FGTLLTMKWL LPSLVLVLLI FQQPLCTCSS ISDLFETWCQ QNGKKYSSEQ ERMYRFKVFE ENYAYITEHN SKGNSSYTLG LNAYSDLTHH EFRNSFLGLS
501: SSANDFIRLK GRGSGSSAAG VLSDVDAPSS LDWRDKGAVT NVKNQGSCGA CWSFSATGAI EGINKITTGS LVSLSEQELI DCDRSYNQGC GGGLMDYAFE
601: FVIKNGGIDT EKDYPFREKE GTCNKNKLQR RVVTIDGYTD IPQNDEDKLL KAVATQPVSV GICGSARAFQ SYSKGIFTGP CPTDLDHAVL IVGYGSENGF
701: DYWIIKNSWG TSWGINGYIH MQRNSGNQEG ICGVNKLASY PTKTSPNPPN PPAPGPSKCS TFTSCGQGET CCCGLKFLGI CLSWKCCGLD SAVCCKDGRH
801: CCPWDYPICD TSRNLCLKRM SNATIVQQPQ KEPFTGKFGG LIYPF

Best Arabidopsis Sequence Match ( AT1G09850.1 )
(BLAST)

001: MSMSSSSFIS LTFFFLLLVS SSSSSDDISE LFDDWCQKHG KTYGSEEERQ QRIQIFKDNH DFVTQHNLIT NATYSLSLNA FADLTHHEFK ASRLGLSVSA
101: PSVIMASKGQ SLGGSVKVPD SVDWRKKGAV TNVKDQGSCG ACWSFSATGA MEGINQIVTG DLISLSEQEL IDCDKSYNAG CNGGLMDYAF EFVIKNHGID
201: TEKDYPYQER DGTCKKDKLK QKVVTIDSYA GVKSNDEKAL MEAVAAQPVS VGICGSERAF QLYSSGIFSG PCSTSLDHAV LIVGYGSQNG VDYWIVKNSW
301: GKSWGMDGFM HMQRNTENSD GVCGINMLAS YPIKTHPNPP PPSPPGPTKC NLFTYCSSGE TCCCARELFG LCFSWKCCEI ESAVCCKDGR HCCPHDYPVC
401: DTTRSLCLKK TGNFTAIKPF WKKNSSKQLG RFEEWVM

Arabidopsis Description

XBCP3At1g09850 [Source:UniProtKB/TrEMBL;Acc:Q0WVJ5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.