Factsheet for Solyc12g094700.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
vacuole 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

extracellular: 29876421

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g087300.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20850.1	Solyc02g087300.1.1	AT3G01340.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400075600	Potato	vacuole	95.47	90.54
Solyc04g082710.2.1	Tomato	cytosol	77.64	84.26
KRH51560	Soybean	endoplasmic reticulum	77.64	73.43
KRH60879	Soybean	endoplasmic reticulum	77.34	73.35
KRH60878	Soybean	endoplasmic reticulum	77.34	73.35
KRH51561	Soybean	endoplasmic reticulum	76.44	72.29
VIT_03s0038g04000.t01	Wine grape	vacuole	75.53	71.02
CDY01351	Canola	endoplasmic reticulum	72.21	68.09
CDY31861	Canola	endoplasmic reticulum	72.21	67.71
Bra012252.1-P	Field mustard	endoplasmic reticulum	71.9	67.61
Bra016447.1-P	Field mustard	endoplasmic reticulum, golgi, vacuole	73.11	67.6
CDX96617	Canola	endoplasmic reticulum	66.47	67.28
AT1G20850.1	Thale cress	endoplasmic reticulum	72.21	67.13
CDY33651	Canola	endoplasmic reticulum	65.86	66.87
TraesCS1B01G033200.1	Wheat	endoplasmic reticulum, extracellular, golgi	70.09	65.91
TraesCS1A01G027300.1	Wheat	endoplasmic reticulum	69.79	65.81
TraesCS1D01G026500.1	Wheat	endoplasmic reticulum	69.79	65.81
GSMUA_Achr3P03740_001	Banana	endoplasmic reticulum	68.58	64.31
TraesCS5D01G152400.1	Wheat	endoplasmic reticulum, golgi, vacuole	68.88	64.04
TraesCS5B01G138300.1	Wheat	endoplasmic reticulum, golgi, vacuole	68.28	63.48
Os05t0108600-01	Rice	extracellular	67.07	62.01
KXG21060	Sorghum	endoplasmic reticulum, golgi, vacuole	69.18	61.73
EES02142	Sorghum	vacuole	69.18	60.58
Os01t0971400-01	Rice	extracellular	66.77	60.55
TraesCS5A01G138700.1	Wheat	plastid	68.28	59.95
Zm00001d011787_P001	Maize	extracellular	69.49	59.74
Zm00001d035689_P001	Maize	extracellular	66.77	58.62
EES07368	Sorghum	extracellular	59.52	55.34
TraesCS6B01G308300.1	Wheat	extracellular, vacuole	59.82	55.15
CDY31498	Canola	cytosol	48.94	54.18
TraesCS6A01G279500.1	Wheat	endoplasmic reticulum, extracellular	58.61	53.89
Os02t0715000-01	Rice	endoplasmic reticulum	59.52	53.83
HORVU6Hr1G070320.2	Barley	endoplasmic reticulum, extracellular	58.31	53.02
Zm00001d017834_P001	Maize	extracellular	49.24	52.41
Solyc02g076970.1.1	Tomato	extracellular	43.81	51.6
TraesCS6D01G259900.1	Wheat	plastid	58.61	51.32
HORVU1Hr1G003940.6	Barley	endoplasmic reticulum	56.19	50.41
Solyc02g093040.2.1	Tomato	endoplasmic reticulum, extracellular, vacuole	54.68	49.86
Solyc12g056000.1.1	Tomato	endoplasmic reticulum	49.55	48.24
Solyc12g056020.1.1	Tomato	extracellular	49.55	48.09
Solyc03g111730.2.1	Tomato	endoplasmic reticulum	51.66	47.5
Solyc12g056010.1.1	Tomato	endoplasmic reticulum	48.04	46.76
Solyc03g044230.1.1	Tomato	extracellular	53.47	46.7
Solyc03g006200.1.1	Tomato	endoplasmic reticulum, extracellular	41.69	45.39
Solyc05g013920.2.1	Tomato	endoplasmic reticulum	48.94	45.25
Solyc02g076910.2.1	Tomato	extracellular, golgi	46.83	44.16
Solyc02g076980.2.1	Tomato	endoplasmic reticulum, golgi	42.9	41.16
Solyc02g077040.2.1	Tomato	extracellular	41.69	40.0
Solyc03g006210.1.1	Tomato	extracellular	41.09	39.31
Solyc01g107760.2.1	Tomato	extracellular	55.29	38.94
Solyc04g078540.2.1	Tomato	endoplasmic reticulum	53.47	37.5
Solyc12g088670.1.1	Tomato	endoplasmic reticulum	51.96	36.91
Solyc04g080880.2.1	Tomato	extracellular	49.55	19.41

Protein Annotations

MapMan:19.4.1.1	MapMan:27.2.10	Gene3D:3.90.70.10	MEROPS:C01.065	GO:GO:0003674	GO:GO:0003824
GO:GO:0004197	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005764	GO:GO:0005773	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	UniProt:K4DH42	PFAM:PF00112	PFAM:PF08246	PRINTS:PR00705	ScanProsite:PS00139
ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF357	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS
InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	SMART:SM00645
SMART:SM00848	SUPFAM:SSF54001	EnsemblPlantsGene:Solyc12g094700.1	EnsemblPlants:Solyc12g094700.1.1	UniParc:UPI00027698A5	:

Description

No Description!

Coordinates

chr12:+:64845235..64847954

Molecular Weight (calculated)

37188.6 Da

IEP (calculated)

5.448

GRAVY (calculated)

-0.527

Length

331 amino acids

Sequence
(BLAST)

001: MSRATFARDF SIVGYSPDDL NSIDNIINLF ETWMERHNKI YKSIEEKLHR FEIFRDNLKH INERNNIVSN YSLGLNDFAD LSHDEFKKMY LGLKVQNERR
101: SNDEFIYSDF VDLPKSVDWR KKGAVTDVKN QGSCGSCWAF STVAAVEGIN QIRTGNLTSL SEQELIDCDT KYNSGCNGGL MDYAFQFIVS QGGLHKEDDY
201: PYLMEEGTCD EKRDESEVVT IDGYHDVPVN DEQSLLKALA NQPLSVAIEA SGRDFQFYKG GVFDGHCGTA LDHGVAAVGY GSTKGLDYII VKNSWGAKWG
301: EKGYIKMKRN TGKASGLCGI NKMASFPTKN K

Best Arabidopsis Sequence Match ( AT4G35350.1 )
(BLAST)

001: MAFSAPSLSK FSLLVAISAS ALLCCAFARD FSIVGYTPEH LTNTDKLLEL FESWMSEHSK AYKSVEEKVH RFEVFRENLM HIDQRNNEIN SYWLGLNEFA
101: DLTHEEFKGR YLGLAKPQFS RKRQPSANFR YRDITDLPKS VDWRKKGAVA PVKDQGQCGS CWAFSTVAAV EGINQITTGN LSSLSEQELI DCDTTFNSGC
201: NGGLMDYAFQ YIISTGGLHK EDDYPYLMEE GICQEQKEDV ERVTISGYED VPENDDESLV KALAHQPVSV AIEASGRDFQ FYKGGVFNGK CGTDLDHGVA
301: AVGYGSSKGS DYVIVKNSWG PRWGEKGFIR MKRNTGKPEG LCGINKMASY PTKTK

Arabidopsis Description

XCP1Cysteine protease XCP1 [Source:UniProtKB/Swiss-Prot;Acc:O65493]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.