Subcellular Localization
min:
: max
Winner_takes_all: extracellular, golgi, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 5
- golgi 5
- plasma membrane 4
- endoplasmic reticulum 5
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G026500.1 | Wheat | endoplasmic reticulum | 97.44 | 97.72 |
| TraesCS1A01G027300.1 | Wheat | endoplasmic reticulum | 97.16 | 97.44 |
| TraesCS5B01G138300.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 91.76 | 90.73 |
| Os05t0108600-01 | Rice | extracellular | 79.26 | 77.93 |
| HORVU1Hr1G003940.6 | Barley | endoplasmic reticulum | 81.25 | 77.51 |
| KXG21060 | Sorghum | endoplasmic reticulum, golgi, vacuole | 77.27 | 73.32 |
| GSMUA_Achr2P04950_001 | Banana | endoplasmic reticulum, golgi | 72.16 | 72.78 |
| VIT_03s0038g04000.t01 | Wine grape | vacuole | 70.45 | 70.45 |
| Solyc12g094700.1.1 | Tomato | extracellular | 65.91 | 70.09 |
| VIT_18s0122g00790.t01 | Wine grape | nucleus | 66.76 | 69.94 |
| Solyc04g082710.2.1 | Tomato | cytosol | 60.51 | 69.84 |
| Zm00001d035689_P001 | Maize | extracellular | 74.43 | 69.5 |
| KRH60879 | Soybean | endoplasmic reticulum | 67.9 | 68.48 |
| CDY01351 | Canola | endoplasmic reticulum | 68.18 | 68.38 |
| PGSC0003DMT400075600 | Potato | vacuole | 67.33 | 67.91 |
| Bra016447.1-P | Field mustard | endoplasmic reticulum, golgi, vacuole | 69.03 | 67.88 |
| CDY31861 | Canola | endoplasmic reticulum | 67.9 | 67.71 |
| KRH60878 | Soybean | endoplasmic reticulum | 67.05 | 67.62 |
| Bra012252.1-P | Field mustard | endoplasmic reticulum | 67.61 | 67.61 |
| KRH51560 | Soybean | endoplasmic reticulum | 67.05 | 67.43 |
| AT4G35350.1 | Thale cress | endoplasmic reticulum | 67.9 | 67.32 |
| KRH51561 | Soybean | endoplasmic reticulum | 66.48 | 66.86 |
| Bra011608.1-P | Field mustard | endoplasmic reticulum | 67.33 | 66.57 |
| CDX75496 | Canola | endoplasmic reticulum | 67.33 | 66.57 |
| GSMUA_Achr3P03740_001 | Banana | endoplasmic reticulum | 66.76 | 66.57 |
| AT1G20850.1 | Thale cress | endoplasmic reticulum | 67.05 | 66.29 |
| CDX96617 | Canola | endoplasmic reticulum | 61.36 | 66.06 |
| PGSC0003DMT400025691 | Potato | endoplasmic reticulum, extracellular | 66.76 | 66.01 |
| CDY33651 | Canola | endoplasmic reticulum | 61.08 | 65.95 |
| CDX69132 | Canola | plastid | 67.61 | 62.63 |
| GSMUA_Achr3P11680_001 | Banana | endoplasmic reticulum, vacuole | 65.62 | 59.08 |
| TraesCS6B01G308300.1 | Wheat | extracellular, vacuole | 58.52 | 57.38 |
| CDY31498 | Canola | cytosol | 47.44 | 55.85 |
| TraesCS3B01G380400.1 | Wheat | golgi | 53.12 | 51.37 |
| TraesCS3B01G378600.1 | Wheat | endoplasmic reticulum | 53.12 | 50.68 |
| TraesCS6B01G379900.1 | Wheat | cytosol, mitochondrion, nucleus | 20.45 | 48.65 |
| TraesCS6B01G378700.1 | Wheat | cytosol, mitochondrion, nucleus | 20.17 | 47.97 |
| TraesCS6B01G182200.1 | Wheat | extracellular | 46.31 | 47.66 |
| TraesCS6B01G182100.1 | Wheat | endoplasmic reticulum, extracellular | 46.31 | 47.66 |
| TraesCS3B01G447400.1 | Wheat | endoplasmic reticulum | 50.57 | 47.59 |
| TraesCS4B01G039500.1 | Wheat | extracellular | 45.74 | 47.21 |
| TraesCS4B01G039600.1 | Wheat | extracellular | 45.74 | 47.21 |
| TraesCS4B01G039700.1 | Wheat | extracellular | 45.74 | 47.21 |
| TraesCS4B01G039800.1 | Wheat | extracellular | 45.74 | 47.21 |
| TraesCS4B01G039900.1 | Wheat | endoplasmic reticulum, extracellular | 45.45 | 46.92 |
| TraesCS3B01G447500.1 | Wheat | extracellular, vacuole | 49.43 | 46.9 |
| TraesCS5B01G072400.1 | Wheat | extracellular | 44.6 | 46.59 |
| TraesCS4B01G040000.1 | Wheat | endoplasmic reticulum, extracellular | 44.89 | 46.33 |
| TraesCS2B01G067700.1 | Wheat | extracellular | 44.32 | 45.88 |
| TraesCS2B01G067800.1 | Wheat | extracellular | 44.32 | 45.88 |
| TraesCS2B01G067900.1 | Wheat | extracellular | 44.32 | 45.88 |
| TraesCS1B01G236800.1 | Wheat | extracellular | 44.03 | 45.72 |
| TraesCS6B01G380200.1 | Wheat | extracellular | 43.18 | 44.84 |
| TraesCS6B01G379300.1 | Wheat | extracellular | 43.18 | 44.84 |
| TraesCS6B01G378400.1 | Wheat | extracellular | 43.18 | 44.84 |
| TraesCS4B01G076200.1 | Wheat | endoplasmic reticulum | 50.85 | 44.75 |
| TraesCS7B01G387600.1 | Wheat | extracellular | 43.18 | 44.71 |
| TraesCS6B01G378900.1 | Wheat | extracellular | 42.9 | 44.54 |
| TraesCS6B01G379200.1 | Wheat | extracellular | 42.9 | 44.54 |
| TraesCS6B01G380000.1 | Wheat | extracellular | 42.9 | 44.54 |
| TraesCS5B01G523100.1 | Wheat | extracellular | 42.9 | 44.41 |
| TraesCS6B01G379000.1 | Wheat | extracellular | 42.61 | 44.25 |
| TraesCS2B01G068000.1 | Wheat | extracellular, golgi, plastid | 36.08 | 43.79 |
| TraesCS7B01G292000.1 | Wheat | cytosol, extracellular, nucleus | 38.07 | 43.65 |
| TraesCS2B01G577300.1 | Wheat | extracellular, golgi | 51.42 | 38.59 |
| TraesCS2B01G577500.1 | Wheat | endoplasmic reticulum | 51.14 | 38.46 |
| TraesCS2B01G540100.2 | Wheat | golgi | 50.57 | 38.44 |
| TraesCS7B01G162200.1 | Wheat | endoplasmic reticulum | 49.72 | 37.96 |
| TraesCS2B01G576300.1 | Wheat | unclear | 49.43 | 37.1 |
| TraesCS1B01G338500.1 | Wheat | endoplasmic reticulum, unclear | 46.02 | 35.06 |
Protein Annotations
| MapMan:19.4.1.1 | MapMan:27.2.10 | Gene3D:3.90.70.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | PFAM:PF00112 |
| PFAM:PF08246 | PRINTS:PR00705 | ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 |
| PANTHER:PTHR12411:SF427 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A |
| InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SignalP:SignalP-noTM |
| EnsemblPlantsGene:TraesCS1B01G033200 | EnsemblPlants:TraesCS1B01G033200.1 | TIGR:cd02248 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr1B:+:16216483..16217635
Molecular Weight (calculated)
38241.9 Da
IEP (calculated)
5.152
GRAVY (calculated)
-0.301
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MASKLSVAVL LLCVGVCVAR NSDFSIVGYS EEDLSSHDRL IELFEKWLAK HEKAYASFEE KLHRFEVFKD NLKLIDEINR EVTSYWLGLN EFADLTQDEF
101: KAAYLGLSPP PARRSSSRSF RYEDVAAHDL PKAVDWRKKG AVTDVKNQGQ CGSCWAFSTV AAVEGINAIV TGNLTALSEQ ELIDCSVDGN SGCNGGMMDY
201: AFSYIASSGG LHTEEAYPYL MEEGSCGDGK KSESEAVVSI SGYEDVPAKD EQALIKALAH QPVSVAIEAS GRHFQFYSGG VFDGPCGAQL DHGVAAVGYG
301: SDKGKGHDYI IVKNSWGAKW GEKGYIRMKR GTGKGEGLCG INKMASYPTK DN
101: KAAYLGLSPP PARRSSSRSF RYEDVAAHDL PKAVDWRKKG AVTDVKNQGQ CGSCWAFSTV AAVEGINAIV TGNLTALSEQ ELIDCSVDGN SGCNGGMMDY
201: AFSYIASSGG LHTEEAYPYL MEEGSCGDGK KSESEAVVSI SGYEDVPAKD EQALIKALAH QPVSVAIEAS GRHFQFYSGG VFDGPCGAQL DHGVAAVGYG
301: SDKGKGHDYI IVKNSWGAKW GEKGYIRMKR GTGKGEGLCG INKMASYPTK DN
001: MALSSPSRIL CFALALSAAS LSLSFASSHD YSIVGYSPED LESHDKLIEL FENWISNFEK AYETVEEKFL RFEVFKDNLK HIDETNKKGK SYWLGLNEFA
101: DLSHEEFKKM YLGLKTDIVR RDEERSYAEF AYRDVEAVPK SVDWRKKGAV AEVKNQGSCG SCWAFSTVAA VEGINKIVTG NLTTLSEQEL IDCDTTYNNG
201: CNGGLMDYAF EYIVKNGGLR KEEDYPYSME EGTCEMQKDE SETVTINGHQ DVPTNDEKSL LKALAHQPLS VAIDASGREF QFYSGGVFDG RCGVDLDHGV
301: AAVGYGSSKG SDYIIVKNSW GPKWGEKGYI RLKRNTGKPE GLCGINKMAS FPTKTK
101: DLSHEEFKKM YLGLKTDIVR RDEERSYAEF AYRDVEAVPK SVDWRKKGAV AEVKNQGSCG SCWAFSTVAA VEGINKIVTG NLTTLSEQEL IDCDTTYNNG
201: CNGGLMDYAF EYIVKNGGLR KEEDYPYSME EGTCEMQKDE SETVTINGHQ DVPTNDEKSL LKALAHQPLS VAIDASGREF QFYSGGVFDG RCGVDLDHGV
301: AAVGYGSSKG SDYIIVKNSW GPKWGEKGYI RLKRNTGKPE GLCGINKMAS FPTKTK
Arabidopsis Description
XCP2Cysteine protease XCP2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM66]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.