Factsheet for VIT_18s0001g13270.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 1
vacuole 6
extracellular 6
golgi 4
plasma membrane 4
endoplasmic reticulum 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH61098	Soybean	endoplasmic reticulum, extracellular, plasma membrane	61.7	61.28
PGSC0003DMT400009624	Potato	extracellular	60.32	59.91
GSMUA_Achr4P17710_001	Banana	endoplasmic reticulum, extracellular	60.09	59.55
Bra019982.1-P	Field mustard	extracellular, golgi	59.17	58.24
CDX93470	Canola	plasma membrane	59.17	58.24
AT1G09850.1	Thale cress	endoplasmic reticulum	57.57	57.44
TraesCS1D01G327000.1	Wheat	extracellular	59.63	57.27
CDX94938	Canola	extracellular, vacuole	58.03	57.24
TraesCS1A01G325400.1	Wheat	extracellular	59.17	56.95
Zm00001d038650_P001	Maize	extracellular	59.63	56.52
TraesCS1B01G338500.1	Wheat	endoplasmic reticulum, unclear	59.63	56.28
EES18460	Sorghum	endoplasmic reticulum	58.72	55.41
Os05t0508300-01	Rice	plasma membrane	56.88	55.11
HORVU1Hr1G075530.3	Barley	plastid	58.03	49.9
VIT_12s0028g02250.t01	Wine grape	cytosol	32.11	47.14
VIT_07s0031g00050.t01	Wine grape	nucleus	35.32	46.67
VIT_18s0122g00790.t01	Wine grape	nucleus	35.55	46.13
VIT_03s0038g04000.t01	Wine grape	vacuole	36.24	44.89
VIT_10s0003g01100.t01	Wine grape	extracellular	34.86	44.71
VIT_01s0137g00330.t01	Wine grape	endoplasmic reticulum	36.47	44.29
VIT_03s0180g00010.t01	Wine grape	extracellular	43.12	44.13
VIT_12s0028g02270.t01	Wine grape	endoplasmic reticulum, extracellular	34.4	43.99
VIT_12s0028g02290.t01	Wine grape	endoplasmic reticulum, extracellular	34.4	43.99
VIT_12s0028g02300.t01	Wine grape	endoplasmic reticulum, extracellular	34.4	43.99
VIT_18s0001g09990.t01	Wine grape	endoplasmic reticulum	46.1	43.04
VIT_12s0028g02260.t01	Wine grape	endoplasmic reticulum, extracellular	31.65	42.86
VIT_17s0000g09770.t01	Wine grape	endoplasmic reticulum	35.32	42.78
Solyc04g080880.2.1	Tomato	extracellular	59.86	30.89

Protein Annotations

EntrezGene:100243729	wikigene:100243729	Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	MEROPS:C01.A13
ProteinID:CBI19772	ProteinID:CBI19772.3	UniProt:E0CPF6	EMBL:FN595227	GO:GO:0003674	GO:GO:0003824
GO:GO:0004197	GO:GO:0005575	GO:GO:0005576	GO:GO:0005615	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005764	GO:GO:0005773	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008234	GO:GO:0009056	GO:GO:0009987	GO:GO:0016787	GO:GO:0019538
GO:GO:0051603	InterPro:Granulin	InterPro:Granulin_sf	InterPro:IPR037277	EntrezGene:LOC100243729	wikigene:LOC100243729
PFAM:PF00112	PFAM:PF00396	PFAM:PF08246	PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639
ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF387	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS	InterPro:Pept_cys_AS
InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	SMART:SM00277	SMART:SM00645
SMART:SM00848	SUPFAM:SSF54001	SUPFAM:SSF57277	SignalP:SignalP-noTM	TIGR:TC54882	UniParc:UPI000198518D
ArrayExpress:VIT_18s0001g13270	EnsemblPlantsGene:VIT_18s0001g13270	EnsemblPlants:VIT_18s0001g13270.t01	unigene:Vvi.16737	RefSeq:XP_002280937	RefSeq:XP_002280937.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr18:-:11311350..11316053

Molecular Weight (calculated)

47432.8 Da

IEP (calculated)

6.417

GRAVY (calculated)

-0.276

Length

436 amino acids

Sequence
(BLAST)

001: MGSWLWAVSI LILAVHSSVS EASSTADLFE AWCEQYGKTY SSEEEKASRL KVFEENHAFV TQHNSMANAS YTLALNAFAD LTHHEFKASR LGFSPGRAQS
101: IRSVGTPVQE LHVPPAVDWR KSGAVTGVKD QGNCGGCWSF STTGAIEGIN KIVTGSLVSL SEQELVDCDR SYNSGCEGGL MDYAYQFVIK NQGIDSEADY
201: PYVGMDKPCN KEKLKKHIVT IDGYTDIPPN DEKQLLQVVA KQPVSVGICG SEKTFQLYSK GVYTGPCSST LDHAVLIVGY GTEDGVDFWI VKNSWGEHWG
301: MRGYIHMLRN NGTAEGICGI NMLASYPAKT SPNPPPPPTP GPTKCDFFSS CSEGETCCCS WRFIGVCLSW NCCTAKSAVC CDNNNYCCPA SHPICDTKRN
401: RCLKPAGNGT GVEVLKRRGS SVKFGGWSSI NDAWNL

Best Arabidopsis Sequence Match ( AT1G09850.1 )
(BLAST)

001: MSMSSSSFIS LTFFFLLLVS SSSSSDDISE LFDDWCQKHG KTYGSEEERQ QRIQIFKDNH DFVTQHNLIT NATYSLSLNA FADLTHHEFK ASRLGLSVSA
101: PSVIMASKGQ SLGGSVKVPD SVDWRKKGAV TNVKDQGSCG ACWSFSATGA MEGINQIVTG DLISLSEQEL IDCDKSYNAG CNGGLMDYAF EFVIKNHGID
201: TEKDYPYQER DGTCKKDKLK QKVVTIDSYA GVKSNDEKAL MEAVAAQPVS VGICGSERAF QLYSSGIFSG PCSTSLDHAV LIVGYGSQNG VDYWIVKNSW
301: GKSWGMDGFM HMQRNTENSD GVCGINMLAS YPIKTHPNPP PPSPPGPTKC NLFTYCSSGE TCCCARELFG LCFSWKCCEI ESAVCCKDGR HCCPHDYPVC
401: DTTRSLCLKK TGNFTAIKPF WKKNSSKQLG RFEEWVM

Arabidopsis Description

XBCP3At1g09850 [Source:UniProtKB/TrEMBL;Acc:Q0WVJ5]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.