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Potato
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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • vacuole 2
  • mitochondrion 1
  • cytosol 2
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, vacuole
BaCelLo:nucleus
EpiLoc:vacuole
MultiLoc:nucleus
Plant-mPloc:vacuole
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 cytosol: 22313117
extracellular: 22313117
msms PMID: 22313117 doi
S Lim, K Chisholm, RH Coffin, RD Peters, KI Al-Mughrabi, G Wang-Pruski, DM Pinto
Department of Plant and Animal Sciences, Nova Scotia Agricultural College, Truro, Nova Scotia, Canada.
PPI

Inferred distinct locusB in Crop

locusBlocations
PGSC0003DMT400010624
PGSC0003DMT400060279

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G47128.1 PGSC0003DMT400010624 AT1G21750.1 18676877
AT1G47128.1 PGSC0003DMT400060279 AT1G21750.1 18676877
AT5G43060.1 PGSC0003DMT400010624 AT1G21750.1 18676877
AT5G43060.1 PGSC0003DMT400060279 AT1G21750.1 18676877
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc04g078540.2.1 Tomato endoplasmic reticulum 95.71 89.83
CDY22370 Canola extracellular 66.37 63.91
Bra033657.1-P Field mustard extracellular 66.14 63.7
CDX71540 Canola extracellular 65.69 63.26
VIT_18s0001g09990.t01 Wine grape endoplasmic reticulum 66.59 63.17
CDY25228 Canola extracellular 64.56 62.17
AT5G43060.1 Thale cress endoplasmic reticulum 64.79 61.99
CDY17093 Canola endoplasmic reticulum 63.88 61.93
CDY06760 Canola endoplasmic reticulum 63.66 61.71
Bra040749.1-P Field mustard endoplasmic reticulum 63.66 61.71
AT1G47128.1 Thale cress endoplasmic reticulum 64.33 61.69
CDY63586 Canola endoplasmic reticulum 63.88 61.66
CDY17044 Canola endoplasmic reticulum 63.43 61.22
GSMUA_Achr4P06140_001 Banana endoplasmic reticulum 64.33 60.77
GSMUA_Achr3P01000_001 Banana endoplasmic reticulum 64.11 60.55
Bra014057.1-P Field mustard endoplasmic reticulum 62.53 60.35
KRH05634 Soybean endoplasmic reticulum 64.79 60.29
KXG27269 Sorghum endoplasmic reticulum 62.3 59.48
GSMUA_Achr10P... Banana endoplasmic reticulum 62.75 59.28
TraesCS2A01G512100.1 Wheat extracellular 61.63 59.22
PGSC0003DMT400066566 Potato endoplasmic reticulum 62.75 59.15
TraesCS2B01G540100.2 Wheat golgi 61.63 58.96
TraesCS2D01G513600.1 Wheat endoplasmic reticulum, golgi, vacuole 61.63 58.96
CDY17193 Canola endoplasmic reticulum 42.21 58.8
Zm00001d002065_P006 Maize plasma membrane 62.08 58.76
KRH15406 Soybean nucleus 65.69 58.67
KRH61341 Soybean endoplasmic reticulum, extracellular, vacuole 48.31 58.31
GSMUA_Achr4P12910_001 Banana endoplasmic reticulum 62.08 58.14
GSMUA_Achr1P15920_001 Banana endoplasmic reticulum 61.63 58.09
Zm00001d026458_P002 Maize endoplasmic reticulum 62.08 57.29
HORVU2Hr1G113460.2 Barley plasma membrane 62.53 56.65
PGSC0003DMT400053921 Potato extracellular 46.5 56.59
PGSC0003DMT400064314 Potato endoplasmic reticulum, extracellular, vacuole 45.6 55.96
PGSC0003DMT400086163 Potato cytosol 29.35 55.79
GSMUA_Achr8P03350_001 Banana endoplasmic reticulum, extracellular, vacuole 41.31 54.95
GSMUA_Achr1P09800_001 Banana endoplasmic reticulum 56.66 53.07
CDY27951 Canola endoplasmic reticulum 54.18 52.29
PGSC0003DMT400026457 Potato extracellular 35.67 50.32
PGSC0003DMT400012877 Potato endoplasmic reticulum, extracellular, vacuole 38.37 50.0
PGSC0003DMT400075600 Potato vacuole 39.28 49.86
PGSC0003DMT400026461 Potato extracellular 38.15 49.71
PGSC0003DMT400025691 Potato endoplasmic reticulum, extracellular 39.73 49.44
PGSC0003DMT400012881 Potato endoplasmic reticulum 37.92 49.41
PGSC0003DMT400039210 Potato endoplasmic reticulum 39.73 48.89
PGSC0003DMT400027975 Potato endoplasmic reticulum 39.05 48.46
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, golgi 37.25 48.1
PGSC0003DMT400012885 Potato extracellular 33.41 47.9
CDY02431 Canola nucleus 46.73 46.1
PGSC0003DMT400026448 Potato endoplasmic reticulum, extracellular, vacuole 35.89 45.82
PGSC0003DMT400009624 Potato extracellular 43.12 43.51
PGSC0003DMT400026491 Potato nucleus 28.44 41.72
PGSC0003DMT400011188 Potato endoplasmic reticulum 31.38 39.94
PGSC0003DMT400026493 Potato extracellular, golgi, vacuole 29.8 38.37
PGSC0003DMT400026464 Potato endoplasmic reticulum, extracellular 29.35 37.79
Protein Annotations
Gene3D:3.10.20.500Gene3D:3.90.70.10MapMan:50.3.4MEROPS:C01.029GO:GO:0003674GO:GO:0003824
GO:GO:0006508GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0008234GO:GO:0016787
GO:GO:0019538InterPro:GranulinInterPro:Granulin_sfInterPro:IPR037277UniProt:M1ADW0PFAM:PF00112
PFAM:PF00396PFAM:PF08246EnsemblPlantsGene:PGSC0003DMG400008004PGSC:PGSC0003DMG400008004EnsemblPlants:PGSC0003DMT400020654PRINTS:PR00705
ScanProsite:PS00139ScanProsite:PS00639ScanProsite:PS00640PANTHER:PTHR12411PANTHER:PTHR12411:SF523InterPro:Papain_like_cys_pep_sf
InterPro:Pept_asp_ASInterPro:Pept_cys_ASInterPro:Pept_his_ASInterPro:Peptidase_C1AInterPro:Peptidase_C1A_CInterPro:Prot_inhib_I29
SMART:SM00277SMART:SM00645SMART:SM00848SUPFAM:SSF54001SUPFAM:SSF57277UniParc:UPI000295B001
SEG:seg:::::
Description
Cysteine protease [Source:PGSC_GENE;Acc:PGSC0003DMG400008004]
Coordinates
chr4:-:67802477..67807222
Molecular Weight (calculated)
48554.3 Da
IEP (calculated)
7.164
GRAVY (calculated)
-0.505
Length
443 amino acids
Sequence
(BLAST)
001: MSIISYNEKH HKIGAGRTDD EVMSLYESWL VEHKKVYNAL GEKDKRFQIF KDNLKYIDEH NAMPEKSYKL GLTKFADLTN EEYRSIYLGT KPDAGRRLSS
101: RQSDRYAPKV GDRLPESVDW VKKGVLVGVK DQGQCGSCWA FSAVAVIEAV NKLKTGDSIS LSEQELVDCD TSTNSGCNGG LMDYAFEFVI KNGGLDTEED
201: YPYTGKDGRC DQTRKNAKVV TIDGYEDVPK NDEQAMKKAI ASQPVSVAIE AGGKDFQHYK SGIFSGKCGA AVDHGVVAVG YGSENGMDYW IVRNSWGASW
301: GEHGYLRMQR NIANPKGLCG IATGVSYPVK TGQNPPKPAP SPPSPVKPPT TCDDMYSCPS GTTCCCVYEY YHMCFAWGCC PMEGATCCKD HNSCCPHDYP
401: VCNVKAGTCS ISKNNPLAVK AMSHILAKPI GSFSNQGMKN TFT
Best Arabidopsis Sequence Match ( AT5G43060.1 )
(BLAST)
001: MGFLKLSPMI LLLAMIGVSY AMDMSIISYD ENHHITTETS RSDSEVERIY EAWMVEHGKK KMNQNGLGAE KDQRFEIFKD NLRFIDEHNT KNLSYKLGLT
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA
Arabidopsis Description
RD21BProbable cysteine protease RD21B [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH8]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.