Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 7
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY06760 | Canola | endoplasmic reticulum | 97.37 | 97.37 |
| CDY17044 | Canola | endoplasmic reticulum | 92.34 | 91.94 |
| CDY63586 | Canola | endoplasmic reticulum | 92.12 | 91.72 |
| AT1G47128.1 | Thale cress | endoplasmic reticulum | 84.25 | 83.33 |
| CDY17193 | Canola | endoplasmic reticulum | 57.99 | 83.33 |
| CDX71540 | Canola | extracellular | 80.09 | 79.57 |
| CDY22370 | Canola | extracellular | 79.43 | 78.91 |
| CDY25228 | Canola | extracellular | 78.34 | 77.83 |
| CDY27951 | Canola | endoplasmic reticulum | 75.49 | 75.16 |
| VIT_18s0001g09990.t01 | Wine grape | endoplasmic reticulum | 71.12 | 69.59 |
| KXG27269 | Sorghum | endoplasmic reticulum | 69.15 | 68.1 |
| Zm00001d002065_P006 | Maize | plasma membrane | 68.27 | 66.67 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 68.27 | 66.52 |
| Zm00001d026458_P002 | Maize | endoplasmic reticulum | 69.15 | 65.83 |
| KRH05634 | Soybean | endoplasmic reticulum | 68.05 | 65.34 |
| TraesCS2A01G512100.1 | Wheat | extracellular | 65.86 | 65.29 |
| TraesCS2B01G540100.2 | Wheat | golgi | 66.08 | 65.23 |
| TraesCS2D01G513600.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 66.08 | 65.23 |
| GSMUA_Achr3P01000_001 | Banana | endoplasmic reticulum | 66.74 | 65.03 |
| KRH15406 | Soybean | nucleus | 69.8 | 64.31 |
| PGSC0003DMT400020654 | Potato | cytosol | 61.93 | 63.88 |
| GSMUA_Achr1P15920_001 | Banana | endoplasmic reticulum | 65.43 | 63.62 |
| KRH61341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 50.77 | 63.22 |
| GSMUA_Achr4P06140_001 | Banana | endoplasmic reticulum | 64.33 | 62.69 |
| Solyc12g088670.1.1 | Tomato | endoplasmic reticulum | 63.68 | 62.45 |
| HORVU2Hr1G113460.2 | Barley | plasma membrane | 66.52 | 62.17 |
| GSMUA_Achr4P12910_001 | Banana | endoplasmic reticulum | 64.33 | 62.16 |
| Solyc04g078540.2.1 | Tomato | endoplasmic reticulum | 63.02 | 61.02 |
| GSMUA_Achr8P03350_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 44.42 | 60.96 |
| CDY22445 | Canola | vacuole | 48.8 | 59.63 |
| CDX75633 | Canola | vacuole | 48.8 | 59.63 |
| CDY46179 | Canola | endoplasmic reticulum | 58.64 | 59.56 |
| CDX69285 | Canola | endoplasmic reticulum, vacuole | 48.14 | 58.82 |
| CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 57.77 | 58.8 |
| CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 57.55 | 58.57 |
| GSMUA_Achr1P09800_001 | Banana | endoplasmic reticulum | 59.3 | 57.29 |
| CDY44047 | Canola | vacuole | 47.92 | 57.03 |
| CDY50154 | Canola | endoplasmic reticulum | 53.17 | 55.23 |
| CDY02431 | Canola | nucleus | 53.83 | 54.79 |
| CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 52.52 | 54.55 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi | 40.92 | 54.52 |
| CDY63262 | Canola | extracellular, plasma membrane, vacuole | 29.32 | 54.03 |
| CDY39574 | Canola | cytosol, endoplasmic reticulum, nucleus | 34.57 | 53.74 |
| CDY01351 | Canola | endoplasmic reticulum | 40.92 | 53.28 |
| CDY31861 | Canola | endoplasmic reticulum | 41.14 | 53.26 |
| CDY37617 | Canola | endoplasmic reticulum, extracellular | 43.11 | 53.24 |
| CDY25281 | Canola | extracellular | 43.11 | 53.1 |
| CDY25283 | Canola | vacuole | 42.89 | 52.55 |
| CDX75496 | Canola | endoplasmic reticulum | 40.92 | 52.53 |
| CDX99227 | Canola | endoplasmic reticulum | 58.21 | 52.47 |
| CDY33651 | Canola | endoplasmic reticulum | 36.76 | 51.53 |
| CDY16132 | Canola | endoplasmic reticulum, extracellular, vacuole | 42.67 | 51.45 |
| CDX96617 | Canola | endoplasmic reticulum | 36.54 | 51.07 |
| CDX69132 | Canola | plastid | 41.14 | 49.47 |
| CDX83168 | Canola | endoplasmic reticulum | 38.73 | 49.03 |
| CDY34045 | Canola | endoplasmic reticulum | 38.29 | 48.48 |
| CDY48168 | Canola | endoplasmic reticulum | 38.07 | 48.47 |
| CDY58055 | Canola | golgi, nucleus, plastid | 34.14 | 48.45 |
| CDX94938 | Canola | extracellular, vacuole | 46.39 | 47.96 |
| CDX93470 | Canola | plasma membrane | 46.17 | 47.63 |
| CDX87758 | Canola | endoplasmic reticulum | 34.79 | 45.95 |
| CDY50483 | Canola | endoplasmic reticulum | 34.79 | 45.95 |
| CDY39575 | Canola | endoplasmic reticulum | 36.98 | 45.92 |
| CDX77621 | Canola | endoplasmic reticulum, extracellular | 33.92 | 45.19 |
| CDY31498 | Canola | cytosol | 29.1 | 44.48 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:A0A078FXL6 | UniProt:A0A078FXL6 | MEROPS:C01.064 |
| EnsemblPlants:CDY17093 | ProteinID:CDY17093 | ProteinID:CDY17093.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 |
| EnsemblPlantsGene:GSBRNA2T00095123001 | InterPro:Granulin | InterPro:Granulin_sf | InterPro:IPR037277 | PFAM:PF00112 | PFAM:PF00396 |
| PFAM:PF08246 | PRINTS:PR00705 | ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 |
| PANTHER:PTHR12411:SF352 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A |
| InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 | SMART:SM00277 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 |
| SUPFAM:SSF57277 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EF0C32 | SEG:seg | : |
Description
BnaC06g00260DBnaC06g00260D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXL6]
Coordinates
chrLK032070:+:437772..440323
Molecular Weight (calculated)
50569.4 Da
IEP (calculated)
5.035
GRAVY (calculated)
-0.437
Length
457 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLLNSATVI LFLTMIVVSS AMDMSIISYD KNHHTVSSRS DAEVSRLYEE WLVKHGKAQN SLTEKDRRFE IFKDNLRFID EHNGKNLSYR LGLTKFADLT
101: NDEYRSMYLG SRLKRKATKS SLRYEVRVGD AIPESVDWRK EGAVAEVKDQ GSCGSCWAFS TIGAVEGINK IVTGDLITLS EQELVDCDTS YNEGCNGGLM
201: DYAFEFIINN GGIDTEEDYP YKGVDGRCDQ TRKNAKVVTI DLYEDVPANS EESLKKALSH QPISVAIEGG GRAFQLYDSG IFDGICGTDL DHGVVAVGYG
301: TENGKDYWIV KNSWGTSWGE SGYIRMERNI ASSAGKCGIA VEPSYPIKNG QNPPNPGPSP PSPVKPPTQC DSYYTCPESN TCCCLFDYGK YCLAWGCCPL
401: EAATCCDDNY SCCPHEYPVC DLDQGTCLMS KNSPFSIKAI KRKPATPFWS QSRKNIA
101: NDEYRSMYLG SRLKRKATKS SLRYEVRVGD AIPESVDWRK EGAVAEVKDQ GSCGSCWAFS TIGAVEGINK IVTGDLITLS EQELVDCDTS YNEGCNGGLM
201: DYAFEFIINN GGIDTEEDYP YKGVDGRCDQ TRKNAKVVTI DLYEDVPANS EESLKKALSH QPISVAIEGG GRAFQLYDSG IFDGICGTDL DHGVVAVGYG
301: TENGKDYWIV KNSWGTSWGE SGYIRMERNI ASSAGKCGIA VEPSYPIKNG QNPPNPGPSP PSPVKPPTQC DSYYTCPESN TCCCLFDYGK YCLAWGCCPL
401: EAATCCDDNY SCCPHEYPVC DLDQGTCLMS KNSPFSIKAI KRKPATPFWS QSRKNIA
001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
Arabidopsis Description
RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.