Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, golgi, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 7
- plasma membrane 5
- golgi 6
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
GSMUA_Achr1P16970_001 | |
GSMUA_Achr3P22070_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
GSMUA_Achr8P03350_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 83.09 | 85.59 |
GSMUA_Achr10P... | Banana | endoplasmic reticulum | 75.22 | 55.01 |
CDY17193 | Canola | endoplasmic reticulum | 49.27 | 53.14 |
KXG27269 | Sorghum | endoplasmic reticulum | 61.52 | 45.47 |
GSMUA_Achr4P06140_001 | Banana | endoplasmic reticulum | 61.52 | 44.99 |
Zm00001d002065_P006 | Maize | plasma membrane | 61.22 | 44.87 |
TraesCS2B01G540100.2 | Wheat | golgi | 60.35 | 44.71 |
TraesCS2A01G512100.1 | Wheat | extracellular | 60.06 | 44.69 |
GSMUA_Achr1P15920_001 | Banana | endoplasmic reticulum | 61.22 | 44.68 |
Zm00001d026458_P002 | Maize | endoplasmic reticulum | 62.39 | 44.58 |
TraesCS2D01G513600.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 60.06 | 44.49 |
GSMUA_Achr4P12910_001 | Banana | endoplasmic reticulum | 60.35 | 43.76 |
KRH61341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 46.06 | 43.05 |
GSMUA_Achr2P04950_001 | Banana | endoplasmic reticulum, golgi | 43.73 | 42.98 |
HORVU2Hr1G113460.2 | Barley | plasma membrane | 60.93 | 42.74 |
GSMUA_Achr3P01000_001 | Banana | endoplasmic reticulum | 58.31 | 42.64 |
VIT_18s0001g09990.t01 | Wine grape | endoplasmic reticulum | 58.02 | 42.61 |
AT1G47128.1 | Thale cress | endoplasmic reticulum | 55.98 | 41.56 |
GSMUA_Achr3P03740_001 | Banana | endoplasmic reticulum | 42.57 | 41.36 |
Bra040749.1-P | Field mustard | endoplasmic reticulum | 55.1 | 41.36 |
KRH05634 | Soybean | endoplasmic reticulum | 57.14 | 41.18 |
CDY17044 | Canola | endoplasmic reticulum | 55.1 | 41.18 |
CDY06760 | Canola | endoplasmic reticulum | 54.81 | 41.14 |
Bra033657.1-P | Field mustard | extracellular | 55.1 | 41.09 |
CDX71540 | Canola | extracellular | 55.1 | 41.09 |
CDY22370 | Canola | extracellular | 55.1 | 41.09 |
CDY63586 | Canola | endoplasmic reticulum | 54.81 | 40.96 |
Bra014057.1-P | Field mustard | endoplasmic reticulum | 54.81 | 40.96 |
CDY17093 | Canola | endoplasmic reticulum | 54.52 | 40.92 |
CDY25228 | Canola | extracellular | 54.81 | 40.87 |
AT5G43060.1 | Thale cress | endoplasmic reticulum | 55.1 | 40.82 |
GSMUA_Achr1P09800_001 | Banana | endoplasmic reticulum | 55.1 | 39.96 |
Solyc12g088670.1.1 | Tomato | endoplasmic reticulum | 53.35 | 39.27 |
KRH15406 | Soybean | nucleus | 55.98 | 38.71 |
GSMUA_AchrUn_... | Banana | endoplasmic reticulum | 40.23 | 38.44 |
GSMUA_Achr10P... | Banana | endoplasmic reticulum | 38.78 | 37.36 |
PGSC0003DMT400020654 | Potato | cytosol | 48.1 | 37.25 |
GSMUA_Achr3P11680_001 | Banana | endoplasmic reticulum, vacuole | 41.69 | 36.57 |
Solyc04g078540.2.1 | Tomato | endoplasmic reticulum | 49.85 | 36.23 |
GSMUA_Achr6P13620_001 | Banana | extracellular, vacuole | 34.4 | 35.54 |
CDY27951 | Canola | endoplasmic reticulum | 46.06 | 34.42 |
CDY02431 | Canola | nucleus | 39.65 | 30.29 |
GSMUA_Achr4P17710_001 | Banana | endoplasmic reticulum, extracellular | 38.19 | 29.77 |
Protein Annotations
Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 | GO:GO:0008150 |
GO:GO:0008152 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_AchrUn_randomG24280_001 | EnsemblPlants:GSMUA_AchrUn_randomP24280_001 |
EnsemblPlants:GSMUA_AchrUn_randomT24280_001 | UniProt:M0UBY6 | PFAM:PF00112 | PFAM:PF08246 | ScanProsite:PS00139 | PANTHER:PTHR12411 |
PANTHER:PTHR12411:SF526 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_cys_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 |
SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI000294EE6B |
SEG:seg | : | : | : | : | : |
Description
oryzain beta chain precursor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG24280_001]
Coordinates
chrchrUn_random:+:120726125..120727818
Molecular Weight (calculated)
38212.9 Da
IEP (calculated)
4.831
GRAVY (calculated)
-0.262
Length
343 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAIIFLLL LAAAAIASAV PDLYMVTSGE GHSEQVSGRS EEEVRLLYLE WVAKHRPSRN ALAEEASRFE VFKDNLRYID AHNAAADRGE HAFRLGLNRF
101: AALTNEEYRA KYLGVRAATS RRRRASSEGS NRYRLRDGDY LPDSIDWREK GAVVGVKDQG SCGSCWAFST IAAVEGINQI VTGDLISLSE QELVDCDTYY
201: NQGCNGGLMD YAFEFIINNG GIDTDEDYPY KARDGTCDTY RKNAHVVAID SYEDVPVNDE QSLQKAVANQ PVSVAIEAGG RTFQLYDSVK LPQDNAILYF
301: YQFSLFIKIM SRLKLLLDLS LNRCSNPYGS LQIFILPHYG DLG
101: AALTNEEYRA KYLGVRAATS RRRRASSEGS NRYRLRDGDY LPDSIDWREK GAVVGVKDQG SCGSCWAFST IAAVEGINQI VTGDLISLSE QELVDCDTYY
201: NQGCNGGLMD YAFEFIINNG GIDTDEDYPY KARDGTCDTY RKNAHVVAID SYEDVPVNDE QSLQKAVANQ PVSVAIEAGG RTFQLYDSVK LPQDNAILYF
301: YQFSLFIKIM SRLKLLLDLS LNRCSNPYGS LQIFILPHYG DLG
001: MAATPIRVIV SALVILSVLL LSSSLGVATE TEIERNETEV RLMYEQWLVE NRKNYNGLGE KERRFKIFKD NLKFVDEHNS VPDRTFEVGL TRFADLTNEE
101: FRAIYLRKKM ERTKDSVKTE RYLYKEGDVL PDEVDWRANG AVVSVKDQGN CGSCWAFSAV GAVEGINQIT TGELISLSEQ ELVDCDRGFV NAGCDGGIMN
201: YAFEFIMKNG GIETDQDYPY NANDLGLCNA DKNNNTRVVT IDGYEDVPRD DEKSLKKAVA HQPVSVAIEA SSQAFQLYKS VNFQSLKKLD
101: FRAIYLRKKM ERTKDSVKTE RYLYKEGDVL PDEVDWRANG AVVSVKDQGN CGSCWAFSAV GAVEGINQIT TGELISLSEQ ELVDCDRGFV NAGCDGGIMN
201: YAFEFIMKNG GIETDQDYPY NANDLGLCNA DKNNNTRVVT IDGYEDVPRD DEKSLKKAVA HQPVSVAIEA SSQAFQLYKS VNFQSLKKLD
Arabidopsis Description
RDL2Probable cysteine protease RDL2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT77]
SUBAcon: [endoplasmic reticulum,extracellular]
SUBAcon: [endoplasmic reticulum,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.