Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- extracellular 6
- golgi 5
- endoplasmic reticulum 7
- plasma membrane 4
- vacuole 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX71540 | Canola | extracellular | 89.2 | 89.78 |
| Bra033657.1-P | Field mustard | extracellular | 88.77 | 89.35 |
| CDY22370 | Canola | extracellular | 88.55 | 89.13 |
| CDY25228 | Canola | extracellular | 86.83 | 87.39 |
| AT1G47128.1 | Thale cress | endoplasmic reticulum | 79.05 | 79.22 |
| VIT_18s0001g09990.t01 | Wine grape | endoplasmic reticulum | 71.27 | 70.66 |
| KXG27269 | Sorghum | endoplasmic reticulum | 67.39 | 67.24 |
| GSMUA_Achr4P06140_001 | Banana | endoplasmic reticulum | 67.17 | 66.31 |
| GSMUA_Achr3P01000_001 | Banana | endoplasmic reticulum | 67.17 | 66.31 |
| Zm00001d002065_P006 | Maize | plasma membrane | 66.95 | 66.24 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 66.95 | 66.1 |
| Zm00001d026458_P002 | Maize | endoplasmic reticulum | 67.82 | 65.42 |
| KRH05634 | Soybean | endoplasmic reticulum | 66.95 | 65.13 |
| TraesCS2A01G512100.1 | Wheat | extracellular | 64.79 | 65.08 |
| TraesCS2D01G513600.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 65.01 | 65.01 |
| TraesCS2B01G540100.2 | Wheat | golgi | 65.01 | 65.01 |
| GSMUA_Achr4P12910_001 | Banana | endoplasmic reticulum | 66.31 | 64.9 |
| PGSC0003DMT400020654 | Potato | cytosol | 61.99 | 64.79 |
| GSMUA_Achr1P15920_001 | Banana | endoplasmic reticulum | 64.36 | 63.4 |
| KRH15406 | Soybean | nucleus | 67.39 | 62.9 |
| Solyc12g088670.1.1 | Tomato | endoplasmic reticulum | 63.07 | 62.66 |
| HORVU2Hr1G113460.2 | Barley | plasma membrane | 66.09 | 62.58 |
| Solyc04g078540.2.1 | Tomato | endoplasmic reticulum | 63.28 | 62.08 |
| KRH61341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 49.03 | 61.85 |
| GSMUA_Achr8P03350_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 44.28 | 61.56 |
| AT3G19390.1 | Thale cress | endoplasmic reticulum | 59.83 | 61.28 |
| AT4G36880.1 | Thale cress | vacuole | 48.38 | 59.57 |
| CDY02431 | Canola | nucleus | 57.02 | 58.8 |
| AT4G23520.1 | Thale cress | endoplasmic reticulum | 44.71 | 58.15 |
| GSMUA_Achr1P09800_001 | Banana | endoplasmic reticulum | 58.75 | 57.51 |
| AT3G19400.1 | Thale cress | endoplasmic reticulum, vacuole | 43.63 | 55.8 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi | 40.82 | 55.1 |
| AT4G11310.1 | Thale cress | endoplasmic reticulum | 42.55 | 54.12 |
| AT4G35350.1 | Thale cress | endoplasmic reticulum | 41.47 | 54.08 |
| AT1G20850.1 | Thale cress | endoplasmic reticulum | 40.82 | 53.09 |
| AT4G11320.1 | Thale cress | endoplasmic reticulum | 41.9 | 52.29 |
| AT5G50260.1 | Thale cress | endoplasmic reticulum | 40.6 | 52.08 |
| AT3G48340.1 | Thale cress | endoplasmic reticulum, extracellular | 40.17 | 51.52 |
| AT1G09850.1 | Thale cress | endoplasmic reticulum | 46.65 | 49.43 |
| AT3G48350.1 | Thale cress | endoplasmic reticulum | 38.01 | 48.35 |
| AT5G45890.1 | Thale cress | endoplasmic reticulum, golgi | 34.13 | 45.66 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | EntrezGene:834321 | ProteinID:AED94905.1 | EMBL:AK229936 |
| ArrayExpress:AT5G43060 | EnsemblPlantsGene:AT5G43060 | RefSeq:AT5G43060 | TAIR:AT5G43060 | RefSeq:AT5G43060-TAIR-G | EnsemblPlants:AT5G43060.1 |
| TAIR:AT5G43060.1 | EMBL:AY062608 | EMBL:AY114661 | ProteinID:BAB08269.1 | MEROPS:C01.A12 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004197 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005576 |
| GO:GO:0005615 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005764 | GO:GO:0005773 |
| GO:GO:0005783 | GO:GO:0005829 | GO:GO:0006508 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0008234 | GO:GO:0009056 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0051603 | InterPro:Granulin | InterPro:Granulin_sf | InterPro:IPR037277 |
| RefSeq:NP_568620.1 | PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00705 | ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 |
| PANTHER:PTHR12411 | PANTHER:PTHR12411:SF523 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS |
| InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 | UniProt:Q9FMH8 | SMART:SM00277 | SMART:SM00645 |
| SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 | SignalP:SignalP-noTM | UniParc:UPI00000A58E3 | SEG:seg |
Description
RD21BProbable cysteine protease RD21B [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH8]
Coordinates
chr5:-:17269310..17272298
Molecular Weight (calculated)
51206.5 Da
IEP (calculated)
6.122
GRAVY (calculated)
-0.457
Length
463 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFLKLSPMI LLLAMIGVSY AMDMSIISYD ENHHITTETS RSDSEVERIY EAWMVEHGKK KMNQNGLGAE KDQRFEIFKD NLRFIDEHNT KNLSYKLGLT
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.