Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- endoplasmic reticulum 7
- golgi 5
- extracellular 5
- vacuole 5
- plasma membrane 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra013705.1-P | Field mustard | extracellular | 64.89 | 70.43 |
| CDY63262 | Canola | extracellular, plasma membrane, vacuole | 47.75 | 68.55 |
| AT4G11320.1 | Thale cress | endoplasmic reticulum | 55.34 | 53.1 |
| AT4G11310.1 | Thale cress | endoplasmic reticulum | 54.21 | 53.02 |
| AT4G36880.1 | Thale cress | vacuole | 53.65 | 50.8 |
| AT3G19400.1 | Thale cress | endoplasmic reticulum, vacuole | 49.16 | 48.34 |
| KXG20680 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 48.03 | 47.77 |
| AT4G35350.1 | Thale cress | endoplasmic reticulum | 45.51 | 45.63 |
| AT3G48340.1 | Thale cress | endoplasmic reticulum, extracellular | 45.51 | 44.88 |
| AT5G43060.1 | Thale cress | endoplasmic reticulum | 58.15 | 44.71 |
| AT1G20850.1 | Thale cress | endoplasmic reticulum | 44.66 | 44.66 |
| EER88857 | Sorghum | endoplasmic reticulum | 46.35 | 44.35 |
| AT1G47128.1 | Thale cress | endoplasmic reticulum | 56.46 | 43.51 |
| EER88858 | Sorghum | golgi, vacuole | 47.19 | 42.32 |
| AT5G45890.1 | Thale cress | endoplasmic reticulum, golgi | 41.01 | 42.2 |
| AT5G50260.1 | Thale cress | endoplasmic reticulum | 42.7 | 42.11 |
| AT3G48350.1 | Thale cress | endoplasmic reticulum | 42.42 | 41.48 |
| Zm00001d036542_P001 | Maize | endoplasmic reticulum, golgi | 46.91 | 41.13 |
| AT3G19390.1 | Thale cress | endoplasmic reticulum | 49.16 | 38.72 |
| AT1G09850.1 | Thale cress | endoplasmic reticulum | 46.91 | 38.22 |
| Zm00001d036541_P002 | Maize | extracellular, plasma membrane | 48.03 | 35.48 |
Protein Annotations
| Gene3D:3.90.70.10 | MapMan:50.3.4 | EntrezGene:828452 | ProteinID:AEE84771.1 | ArrayExpress:AT4G23520 | EnsemblPlantsGene:AT4G23520 |
| RefSeq:AT4G23520 | TAIR:AT4G23520 | RefSeq:AT4G23520-TAIR-G | EnsemblPlants:AT4G23520.1 | TAIR:AT4G23520.1 | MEROPS:C01.A22 |
| ProteinID:CAA20473.1 | ProteinID:CAB79307.1 | UniProt:F4JNL3 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004197 |
| GO:GO:0005575 | GO:GO:0005576 | GO:GO:0005615 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005764 | GO:GO:0005773 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008233 |
| GO:GO:0008234 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0051603 |
| RefSeq:NP_567686.2 | PFAM:PF00112 | PFAM:PF08246 | PRINTS:PR00705 | ScanProsite:PS00639 | ScanProsite:PS00640 |
| PANTHER:PTHR12411 | PANTHER:PTHR12411:SF526 | InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A |
| InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SignalP:SignalP-noTM |
| TMHMM:TMhelix | UniParc:UPI000034F102 | : | : | : | : |
Description
RDL6Probable cysteine protease RDL6 [Source:UniProtKB/Swiss-Prot;Acc:F4JNL3]
Coordinates
chr4:-:12274315..12276322
Molecular Weight (calculated)
39606.7 Da
IEP (calculated)
5.727
GRAVY (calculated)
-0.378
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFVRPVCMT ILFLLIVFVL SAPSSAMDLP ATSGGHNRSN EEVEFIFQMW MSKHGKTYTN ALGEKERRFQ NFKDNLRFID QHNAKNLSYQ LGLTRFADLT
101: VQEYRDLFPG SPKPKQRNLK TSRRYVPLAG DQLPESVDWR QEGAVSEIKD QGTCNSCWAF STVAAVEGLN KIVTGELISL SEQELVDCNL VNNGCYGSGL
201: MDTAFQFLIN NNGLDSEKDY PYQGTQGSCN RKQSTSNKVI TIDSYEDVPA NDEISLQKAV AHQPVSVGVD KKSQEFMLYR SCIYNGPCGT NLDHALVIVG
301: YGSENGQDYW IVRNSWGTTW GDAGYIKIAR NFEDPKGLCG IAMLASYPIK NSASNA
101: VQEYRDLFPG SPKPKQRNLK TSRRYVPLAG DQLPESVDWR QEGAVSEIKD QGTCNSCWAF STVAAVEGLN KIVTGELISL SEQELVDCNL VNNGCYGSGL
201: MDTAFQFLIN NNGLDSEKDY PYQGTQGSCN RKQSTSNKVI TIDSYEDVPA NDEISLQKAV AHQPVSVGVD KKSQEFMLYR SCIYNGPCGT NLDHALVIVG
301: YGSENGQDYW IVRNSWGTTW GDAGYIKIAR NFEDPKGLCG IAMLASYPIK NSASNA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.