Factsheet for GSMUA_Achr3P01000_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 6
endoplasmic reticulum 7
vacuole 7
plasma membrane 5
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P16970_001
GSMUA_Achr3P22070_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47128.1	GSMUA_Achr1P16970_001	AT1G21750.1	18676877
AT1G47128.1	GSMUA_Achr3P22070_001	AT1G21750.1	18676877
AT5G43060.1	GSMUA_Achr1P16970_001	AT1G21750.1	18676877
AT5G43060.1	GSMUA_Achr3P22070_001	AT1G21750.1	18676877

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P15920_001	Banana	endoplasmic reticulum	81.88	81.7
GSMUA_Achr4P12910_001	Banana	endoplasmic reticulum	76.55	75.9
GSMUA_Achr4P06140_001	Banana	endoplasmic reticulum	75.69	75.69
KXG27269	Sorghum	endoplasmic reticulum	70.58	71.34
Zm00001d002065_P006	Maize	plasma membrane	71.0	71.15
TraesCS2A01G512100.1	Wheat	extracellular	69.08	70.28
TraesCS2D01G513600.1	Wheat	endoplasmic reticulum, golgi, vacuole	69.3	70.19
TraesCS2B01G540100.2	Wheat	golgi	69.3	70.19
VIT_18s0001g09990.t01	Wine grape	endoplasmic reticulum	69.51	69.81
GSMUA_Achr10P...	Banana	endoplasmic reticulum	69.51	69.51
Zm00001d026458_P002	Maize	endoplasmic reticulum	70.58	68.96
Bra033657.1-P	Field mustard	extracellular	67.38	68.7
CDY22370	Canola	extracellular	67.38	68.7
CDX71540	Canola	extracellular	67.16	68.48
CDY25228	Canola	extracellular	66.31	67.61
AT5G43060.1	Thale cress	endoplasmic reticulum	66.31	67.17
AT1G47128.1	Thale cress	endoplasmic reticulum	65.88	66.88
CDY17093	Canola	endoplasmic reticulum	65.03	66.74
CDY63586	Canola	endoplasmic reticulum	65.25	66.67
CDY17044	Canola	endoplasmic reticulum	64.82	66.23
HORVU2Hr1G113460.2	Barley	plasma membrane	68.87	66.05
Bra040749.1-P	Field mustard	endoplasmic reticulum	64.18	65.86
Bra014057.1-P	Field mustard	endoplasmic reticulum	64.39	65.8
KRH05634	Soybean	endoplasmic reticulum	66.74	65.76
CDY06760	Canola	endoplasmic reticulum	63.97	65.65
GSMUA_Achr8P03350_001	Banana	endoplasmic reticulum, extracellular, vacuole	46.48	65.47
GSMUA_Achr1P09800_001	Banana	endoplasmic reticulum	65.67	65.12
PGSC0003DMT400020654	Potato	cytosol	60.55	64.11
KRH15406	Soybean	nucleus	67.16	63.51
Solyc12g088670.1.1	Tomato	endoplasmic reticulum	62.69	63.09
Solyc04g078540.2.1	Tomato	endoplasmic reticulum	61.83	61.44
CDY17193	Canola	endoplasmic reticulum	41.58	61.32
KRH61341	Soybean	endoplasmic reticulum, extracellular, vacuole	45.84	58.58
GSMUA_AchrUn_...	Banana	endoplasmic reticulum, extracellular, golgi	42.64	58.31
CDY27951	Canola	endoplasmic reticulum	54.8	55.99
GSMUA_AchrUn_...	Banana	endoplasmic reticulum	40.09	52.37
GSMUA_Achr2P04950_001	Banana	endoplasmic reticulum, golgi	38.17	51.29
GSMUA_Achr3P03740_001	Banana	endoplasmic reticulum	38.17	50.71
GSMUA_Achr10P...	Banana	endoplasmic reticulum	37.74	49.72
CDY02431	Canola	nucleus	46.7	48.78
GSMUA_Achr4P17710_001	Banana	endoplasmic reticulum, extracellular	44.35	47.27
GSMUA_Achr6P13620_001	Banana	extracellular, vacuole	33.05	46.69
GSMUA_Achr3P11680_001	Banana	endoplasmic reticulum, vacuole	37.53	45.01

Protein Annotations

Gene3D:3.10.20.500	Gene3D:3.90.70.10	MapMan:50.3.4	GO:GO:0003674	GO:GO:0003824	GO:GO:0006508
GO:GO:0008150	GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0016787	GO:GO:0019538
EnsemblPlantsGene:GSMUA_Achr3G01000_001	EnsemblPlants:GSMUA_Achr3P01000_001	EnsemblPlants:GSMUA_Achr3T01000_001	InterPro:Granulin	InterPro:Granulin_sf	InterPro:IPR037277
UniProt:M0SAR8	PFAM:PF00112	PFAM:PF00396	PFAM:PF08246	PRINTS:PR00705	ScanProsite:PS00139
ScanProsite:PS00639	ScanProsite:PS00640	PANTHER:PTHR12411	PANTHER:PTHR12411:SF352	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS
InterPro:Pept_cys_AS	InterPro:Pept_his_AS	InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	SMART:SM00277
SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001	SUPFAM:SSF57277	SignalP:SignalP-noTM	TMHMM:TMhelix
UniParc:UPI0002957BEE	SEG:seg	:	:	:	:

Description

Oryzain alpha chain [Source:GMGC_GENE;Acc:GSMUA_Achr3G01000_001]

Coordinates

chr3:-:749708..753927

Molecular Weight (calculated)

51523.8 Da

IEP (calculated)

5.235

GRAVY (calculated)

-0.371

Length

469 amino acids

Sequence
(BLAST)

001: MVSTACLAAL LLVLFGLASA ASDMSIISYD EEHGVKGLER SKEEMRRMYE GWLIKHGRTY NALGEMERRF EIFKDNLRFI DAHNAEADAG LHRYRLGLNR
101: FADLTNEEYR AGFIGTRPRG AARRNRVPSD RYRLGDGEEL PESVDWRAKG AVAAVKDQGY CGSCWAFSTV GAVEGINQIV TGELITLSEQ ELVDCDNSYN
201: MGCNGGLMDY AFEFIINNGG IDTEDDYPYK ARNGMCDQNK KNAKVVSIDG YEDVPQNDEK ALQKAVVNQP VSVAIEAGGR AFQLYQSGIF TGRCGTRLDH
301: GVVVVGYGSD NGKDYWIVRN SWGGDWGEAG YIRMERNIKA STGKCGIAME PSYPIKKGKN PPHPGPSPPS PVSPPTVCDE YYSCPPATTC CCLYEYGSYC
401: FAWGCCPLEA AICCDDHFSC CPHDYPACNV GAGTCQISKD NPLGVKALVR TPAKPLWAFS EKNNVTLTL

Best Arabidopsis Sequence Match ( AT5G43060.1 )
(BLAST)

001: MGFLKLSPMI LLLAMIGVSY AMDMSIISYD ENHHITTETS RSDSEVERIY EAWMVEHGKK KMNQNGLGAE KDQRFEIFKD NLRFIDEHNT KNLSYKLGLT
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA

Arabidopsis Description

RD21BProbable cysteine protease RD21B [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH8]
SUBAcon: [endoplasmic reticulum]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.