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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • plastid 1
  • extracellular 5
  • golgi 4
  • plasma membrane 4
  • endoplasmic reticulum 6
  • vacuole 4
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:plastid, secretory
BaCelLo:plastid
iPSORT:secretory
MultiLoc:endoplasmic reticulum
Predotar:secretory
PProwler:secretory
TargetP:secretory
WoLF PSORT:extracellular
YLoc:endoplasmic reticulum
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX96575
CDY00400
CDY01314
CDY04673
CDY08176
CDY38821

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT1G47128.1 CDX96575 AT1G21750.1 18676877
AT1G47128.1 CDY00400 AT1G21750.1 18676877
AT1G47128.1 CDY01314 AT1G21750.1 18676877
AT1G47128.1 CDY04673 AT1G21750.1 18676877
AT1G47128.1 CDY08176 AT1G21750.1 18676877
AT1G47128.1 CDY38821 AT1G21750.1 18676877
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY17044 Canola endoplasmic reticulum 86.16 59.7
CDY63586 Canola endoplasmic reticulum 85.22 59.04
CDY06760 Canola endoplasmic reticulum 83.65 58.21
CDY17093 Canola endoplasmic reticulum 83.33 57.99
GSMUA_Achr8P03350_001 Banana endoplasmic reticulum, extracellular, vacuole 59.12 56.46
KRH61341 Soybean endoplasmic reticulum, extracellular, vacuole 60.38 52.32
CDY63262 Canola extracellular, plasma membrane, vacuole 40.57 52.02
AT1G47128.1 Thale cress endoplasmic reticulum 74.53 51.3
CDY27951 Canola endoplasmic reticulum 72.64 50.33
GSMUA_AchrUn_... Banana endoplasmic reticulum, extracellular, golgi 53.14 49.27
CDY22370 Canola extracellular 71.07 49.13
CDX71540 Canola extracellular 71.07 49.13
CDY25228 Canola extracellular 70.44 48.7
CDY22445 Canola vacuole 56.29 47.86
CDX75633 Canola vacuole 55.66 47.33
CDX69285 Canola endoplasmic reticulum, vacuole 55.03 46.79
VIT_18s0001g09990.t01 Wine grape endoplasmic reticulum 66.98 45.61
CDY44047 Canola vacuole 55.03 45.57
CDY37617 Canola endoplasmic reticulum, extracellular 51.26 44.05
CDY25281 Canola extracellular 51.26 43.94
CDY01351 Canola endoplasmic reticulum 48.11 43.59
CDX75496 Canola endoplasmic reticulum 48.74 43.54
CDY31861 Canola endoplasmic reticulum 48.11 43.34
CDY25283 Canola vacuole 50.63 43.16
KXG27269 Sorghum endoplasmic reticulum 62.58 42.89
CDY58055 Canola golgi, nucleus, plastid 43.4 42.86
KRH05634 Soybean endoplasmic reticulum 63.84 42.65
GSMUA_Achr4P06140_001 Banana endoplasmic reticulum 62.89 42.64
TraesCS2B01G540100.2 Wheat golgi 61.95 42.55
TraesCS2D01G513600.1 Wheat endoplasmic reticulum, golgi, vacuole 61.95 42.55
TraesCS2A01G512100.1 Wheat extracellular 61.64 42.52
CDY16132 Canola endoplasmic reticulum, extracellular, vacuole 50.63 42.48
PGSC0003DMT400020654 Potato cytosol 58.8 42.21
CDY39574 Canola cytosol, endoplasmic reticulum, nucleus 38.99 42.18
Zm00001d002065_P006 Maize plasma membrane 61.95 42.09
KRH15406 Soybean nucleus 65.09 41.73
Zm00001d026458_P002 Maize endoplasmic reticulum 62.89 41.67
Solyc12g088670.1.1 Tomato endoplasmic reticulum 61.01 41.63
GSMUA_Achr3P01000_001 Banana endoplasmic reticulum 61.32 41.58
CDX69132 Canola plastid 49.06 41.05
HORVU2Hr1G113460.2 Barley plasma membrane 62.89 40.9
Solyc04g078540.2.1 Tomato endoplasmic reticulum 60.69 40.89
CDX77621 Canola endoplasmic reticulum, extracellular 44.03 40.82
CDX83168 Canola endoplasmic reticulum 46.23 40.72
GSMUA_Achr4P12910_001 Banana endoplasmic reticulum 60.38 40.59
CDY34045 Canola endoplasmic reticulum 45.91 40.44
CDX96617 Canola endoplasmic reticulum 41.51 40.37
GSMUA_Achr1P15920_001 Banana endoplasmic reticulum 59.43 40.21
CDY33651 Canola endoplasmic reticulum 41.2 40.18
CDY50483 Canola endoplasmic reticulum 43.71 40.17
CDX87758 Canola endoplasmic reticulum 43.71 40.17
CDY31498 Canola cytosol 37.74 40.13
GSMUA_Achr10P... Banana endoplasmic reticulum 59.12 40.09
CDY48168 Canola endoplasmic reticulum 44.34 39.28
CDY46179 Canola endoplasmic reticulum 55.03 38.89
CDY50157 Canola endoplasmic reticulum, extracellular, vacuole 54.4 38.53
CDX95457 Canola endoplasmic reticulum, extracellular, vacuole 54.4 38.53
GSMUA_Achr1P09800_001 Banana endoplasmic reticulum 56.6 38.05
CDY39575 Canola endoplasmic reticulum 44.03 38.04
CDX95451 Canola endoplasmic reticulum, extracellular, vacuole 50.63 36.59
CDY50154 Canola endoplasmic reticulum 50.63 36.59
CDY02431 Canola nucleus 51.26 36.3
CDX99227 Canola endoplasmic reticulum 55.35 34.71
CDX94938 Canola extracellular, vacuole 46.23 33.26
CDX93470 Canola plasma membrane 46.23 33.18
Protein Annotations
Gene3D:3.90.70.10MapMan:50.3.4GO:A0A078FXV9UniProt:A0A078FXV9EnsemblPlants:CDY17193ProteinID:CDY17193
ProteinID:CDY17193.1GO:GO:0003674GO:GO:0003824GO:GO:0006508GO:GO:0008150GO:GO:0008152
GO:GO:0008234GO:GO:0016787GO:GO:0019538EnsemblPlantsGene:GSBRNA2T00095257001PFAM:PF00112PFAM:PF08246
PRINTS:PR00705ScanProsite:PS00139PANTHER:PTHR12411PANTHER:PTHR12411:SF352InterPro:Papain_like_cys_pep_sfInterPro:Pept_cys_AS
InterPro:Peptidase_C1AInterPro:Peptidase_C1A_CInterPro:Prot_inhib_I29SMART:SM00645SMART:SM00848SUPFAM:SSF54001
SignalP:SignalP-noTMTMHMM:TMhelixUniParc:UPI0004EEEB0B:::
Description
BnaA05g09950DBnaA05g09950D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FXV9]
Coordinates
chrLK032071:-:372564..379548
Molecular Weight (calculated)
35729.2 Da
IEP (calculated)
5.016
GRAVY (calculated)
-0.388
Length
318 amino acids
Sequence
(BLAST)
001: MKLINPVMAI LFLTMIALST AMDMSIISYD DSHHTVSAGS RSEAEVSRLY EEWLGKHGKV QSSLTEKDRR FEIFKDNLRF IDDHNAKNLS YRLGLTNYSP
101: KFADLTNDEY RSMYVGSRLK RTITRTSLRY EARVGDTLPE SVDWRKEGAV AEVKDQGSCG SCWAFSAIEA VEGVNKIMMG DLISLYEQEL VDCDTPYNEG
201: CSGGLMDYAF KFIINNGGVD TEEDYPYKVV DGRCDQTRKN AKVVTIDSYE DVPANIKESL KKAFSHQPIS VAIEAGGRVF QLYDSGIFDG ICGTNLDHGV
301: LPVGYRTENG KNYWIVKN
Best Arabidopsis Sequence Match ( AT1G47128.1 )
(BLAST)
001: MGFLKPTMAI LFLAMVAVSS AVDMSIISYD EKHGVSTTGG RSEAEVMSIY EAWLVKHGKA QSQNSLVEKD RRFEIFKDNL RFVDEHNEKN LSYRLGLTRF
101: ADLTNDEYRS KYLGAKMEKK GERRTSLRYE ARVGDELPES IDWRKKGAVA EVKDQGGCGS CWAFSTIGAV EGINQIVTGD LITLSEQELV DCDTSYNEGC
201: NGGLMDYAFE FIIKNGGIDT DKDYPYKGVD GTCDQIRKNA KVVTIDSYED VPTYSEESLK KAVAHQPISI AIEAGGRAFQ LYDSGIFDGS CGTQLDHGVV
301: AVGYGTENGK DYWIVRNSWG KSWGESGYLR MARNIASSSG KCGIAIEPSY PIKNGENPPN PGPSPPSPIK PPTQCDSYYT CPESNTCCCL FEYGKYCFAW
401: GCCPLEAATC CDDNYSCCPH EYPVCDLDQG TCLLSKNSPF SVKALKRKPA TPFWSQGRKN IA
Arabidopsis Description
RD21ARD21A [Source:UniProtKB/TrEMBL;Acc:A0A178WIH7]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.