CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 5
endoplasmic reticulum 7
vacuole 7
plasma membrane 5
golgi 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	plastid, secretory
BaCelLo:	secretory
EpiLoc:	vacuole
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	vacuole
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX77719
CDX77721
CDX77779
CDX77781
CDX77784
CDX80270
CDX84467
CDX87694
CDY17722
CDY17724
CDY33037
CDY33502
CDY37163
CDY37164
CDY37166
CDY41336
CDY43629
CDY43630
CDY53682
CDY56707
CDY67243

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G45890.1	CDX77719	AT5G47590.1	21798944
AT5G45890.1	CDX77721	AT5G47590.1	21798944
AT5G45890.1	CDX77779	AT5G47590.1	21798944
AT5G45890.1	CDX77781	AT5G47590.1	21798944
AT5G45890.1	CDX77784	AT5G47590.1	21798944
AT5G45890.1	CDX80270	AT5G47590.1	21798944
AT5G45890.1	CDX84467	AT5G47590.1	21798944
AT5G45890.1	CDX87694	AT5G47590.1	21798944
AT5G45890.1	CDY17722	AT5G47590.1	21798944
AT5G45890.1	CDY17724	AT5G47590.1	21798944
AT5G45890.1	CDY33037	AT5G47590.1	21798944
AT5G45890.1	CDY33502	AT5G47590.1	21798944
AT5G45890.1	CDY37163	AT5G47590.1	21798944
AT5G45890.1	CDY37164	AT5G47590.1	21798944
AT5G45890.1	CDY37166	AT5G47590.1	21798944
AT5G45890.1	CDY41336	AT5G47590.1	21798944
AT5G45890.1	CDY43629	AT5G47590.1	21798944
AT5G45890.1	CDY43630	AT5G47590.1	21798944
AT5G45890.1	CDY53682	AT5G47590.1	21798944
AT5G45890.1	CDY56707	AT5G47590.1	21798944
AT5G45890.1	CDY67243	AT5G47590.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra021998.1-P	Field mustard	endoplasmic reticulum	100.0	100.0
CDX87758	Canola	endoplasmic reticulum	99.13	99.13
AT5G45890.1	Thale cress	endoplasmic reticulum, golgi	85.84	85.84
CDY58055	Canola	golgi, nucleus, plastid	71.68	77.02
CDX77621	Canola	endoplasmic reticulum, extracellular	76.3	76.97
PGSC0003DMT400026448	Potato	endoplasmic reticulum, extracellular, vacuole	56.07	55.91
Solyc02g076910.2.1	Tomato	extracellular, golgi	56.36	55.56
TraesCS5A01G391500.1	Wheat	endoplasmic reticulum, extracellular	53.47	53.47
TraesCS5D01G401300.1	Wheat	extracellular	53.18	53.33
HORVU5Hr1G095580.1	Barley	endoplasmic reticulum, extracellular	53.18	52.72
CDY39574	Canola	cytosol, endoplasmic reticulum, nucleus	44.22	52.04
EER93437	Sorghum	endoplasmic reticulum	50.58	49.58
Zm00001d013261_P001	Maize	extracellular	47.98	48.68
CDX75496	Canola	endoplasmic reticulum	49.42	48.03
CDX83168	Canola	endoplasmic reticulum	48.55	46.54
CDY34045	Canola	endoplasmic reticulum	48.55	46.54
CDY48168	Canola	endoplasmic reticulum	47.98	46.24
CDY31861	Canola	endoplasmic reticulum	45.66	44.76
CDX69132	Canola	plastid	49.13	44.74
CDX96617	Canola	endoplasmic reticulum	41.91	44.34
CDY33651	Canola	endoplasmic reticulum	41.62	44.17
CDY01351	Canola	endoplasmic reticulum	44.8	44.16
CDY17193	Canola	endoplasmic reticulum	40.17	43.71
CDY22445	Canola	vacuole	46.53	43.05
CDY39575	Canola	endoplasmic reticulum	45.38	42.66
CDX75633	Canola	vacuole	45.95	42.51
CDY44047	Canola	vacuole	46.24	41.67
CDX69285	Canola	endoplasmic reticulum, vacuole	44.8	41.44
CDY25283	Canola	vacuole	39.88	37.0
CDY37617	Canola	endoplasmic reticulum, extracellular	39.31	36.76
CDY46179	Canola	endoplasmic reticulum	47.4	36.44
CDY25281	Canola	extracellular	38.73	36.12
CDY50157	Canola	endoplasmic reticulum, extracellular, vacuole	46.82	36.08
CDY63586	Canola	endoplasmic reticulum	47.69	35.95
CDX95457	Canola	endoplasmic reticulum, extracellular, vacuole	46.53	35.86
CDY17044	Canola	endoplasmic reticulum	47.11	35.51
CDY31498	Canola	cytosol	30.64	35.45
CDY25228	Canola	extracellular	47.11	35.43
CDY16132	Canola	endoplasmic reticulum, extracellular, vacuole	38.73	35.36
CDY06760	Canola	endoplasmic reticulum	46.53	35.23
CDX95451	Canola	endoplasmic reticulum, extracellular, vacuole	44.8	35.23
CDY50154	Canola	endoplasmic reticulum	44.8	35.23
CDY22370	Canola	extracellular	46.53	35.0
CDX71540	Canola	extracellular	46.53	35.0
CDY17093	Canola	endoplasmic reticulum	45.95	34.79
CDY63262	Canola	extracellular, plasma membrane, vacuole	23.99	33.47
CDX93470	Canola	plasma membrane	42.49	33.18
CDX94938	Canola	extracellular, vacuole	41.91	32.81
CDX99227	Canola	endoplasmic reticulum	47.11	32.15
CDY27951	Canola	endoplasmic reticulum	37.86	28.54
CDY02431	Canola	nucleus	34.68	26.73

Protein Annotations

MapMan:19.4.1.1	Gene3D:3.90.70.10	GO:A0A078IN71	UniProt:A0A078IN71	EnsemblPlants:CDY50483	ProteinID:CDY50483
ProteinID:CDY50483.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006508	GO:GO:0008150	GO:GO:0008152
GO:GO:0008233	GO:GO:0008234	GO:GO:0016787	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00096867001	MEROPS:I29.003
PFAM:PF00112	PFAM:PF08246	PRINTS:PR00705	ScanProsite:PS00139	ScanProsite:PS00639	ScanProsite:PS00640
PANTHER:PTHR12411	PANTHER:PTHR12411:SF297	InterPro:Papain_like_cys_pep_sf	InterPro:Pept_asp_AS	InterPro:Pept_cys_AS	InterPro:Pept_his_AS
InterPro:Peptidase_C1A	InterPro:Peptidase_C1A_C	InterPro:Prot_inhib_I29	SMART:SM00645	SMART:SM00848	SUPFAM:SSF54001
SignalP:SignalP-noTM	UniParc:UPI0002545B6C	:	:	:	:

Description

BnaA02g24130DBnaA02g24130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IN71]

Coordinates

chrLK032916:+:12675..15017

Molecular Weight (calculated)

38019.0 Da

IEP (calculated)

7.376

GRAVY (calculated)

-0.302

Length

346 amino acids

Sequence
(BLAST)

001: MALEHIKIFL IVSLVSSFCF STTLSRLLDD ELIMQKKHDE WMAEHGRTYA DMNEKNSRYV VFKRNVERIE RLNNVPAGRT FKLAVNQFAD LTNDEFRSMY
101: TGYKGDSVLS SQSQTKSTSF RYQNVSSGAL PIAVDWRKKG AVTPIKNQGS CGCCWAFSAV AAIEGATQIK KGKLISLSEQ QLVDCDTNDF GCSGGLMDTA
201: FEHIMATGGL TTESNYPYKG EDATCKIKST KPSAASITGY EDVPVNDENA LMKAVAHQPV SVGIEGGGFD FQFYSSGVFT GECTTYLDHA VTAVGYSQSS
301: AGSKYWIIKN SWGTKWGEGG YMRIKKDIKD KEGLCGLAMK ASYPTI

Best Arabidopsis Sequence Match ( AT5G45890.1 )
(BLAST)

001: MALKHMQIFL FVAIFSSFCF SITLSRPLDN ELIMQKRHIE WMTKHGRVYA DVKEENNRYV VFKNNVERIE HLNSIPAGRT FKLAVNQFAD LTNDEFRSMY
101: TGFKGVSALS SQSQTKMSPF RYQNVSSGAL PVSVDWRKKG AVTPIKNQGS CGCCWAFSAV AAIEGATQIK KGKLISLSEQ QLVDCDTNDF GCEGGLMDTA
201: FEHIKATGGL TTESNYPYKG EDATCNSKKT NPKATSITGY EDVPVNDEQA LMKAVAHQPV SVGIEGGGFD FQFYSSGVFT GECTTYLDHA VTAIGYGEST
301: NGSKYWIIKN SWGTKWGESG YMRIQKDVKD KQGLCGLAMK ASYPTI

Arabidopsis Description

SAG12Senescence-specific cysteine protease SAG12 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ47]
SUBAcon: [endoplasmic reticulum,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.