Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY56707 | Canola | cytosol | 84.79 | 84.47 |
| CDY41336 | Canola | cytosol | 84.03 | 83.08 |
| CDX77721 | Canola | cytosol | 83.65 | 82.09 |
| CDX77719 | Canola | cytosol | 69.2 | 79.48 |
| CDX84467 | Canola | cytosol | 30.04 | 73.15 |
| CDY33502 | Canola | cytosol | 72.62 | 72.08 |
| CDY53682 | Canola | cytosol | 71.1 | 70.83 |
| CDY37166 | Canola | cytosol | 60.84 | 70.48 |
| CDX87694 | Canola | cytosol | 51.33 | 68.88 |
| CDY37163 | Canola | mitochondrion | 51.33 | 68.88 |
| CDY33037 | Canola | cytosol | 84.03 | 65.58 |
| CDY67243 | Canola | cytosol | 44.11 | 65.17 |
| CDY43629 | Canola | cytosol | 46.77 | 65.08 |
| CDY37164 | Canola | mitochondrion | 43.35 | 62.64 |
| CDX77784 | Canola | cytosol | 56.65 | 57.98 |
| CDX77781 | Canola | cytosol | 57.03 | 57.92 |
| CDX77779 | Canola | cytosol | 56.65 | 57.75 |
| CDY17722 | Canola | cytosol | 57.03 | 57.69 |
| AT5G47590.1 | Thale cress | cytosol | 57.79 | 57.58 |
| CDY43630 | Canola | cytosol | 25.1 | 56.9 |
| CDY17724 | Canola | cytosol | 54.37 | 56.75 |
| CDY09681 | Canola | cytosol | 25.1 | 28.7 |
| CDX90510 | Canola | cytosol | 28.52 | 28.63 |
| CDY53640 | Canola | cytosol | 28.14 | 27.92 |
| CDY32265 | Canola | cytosol | 28.14 | 27.92 |
| CDY50850 | Canola | cytosol | 28.14 | 27.92 |
| CDY09679 | Canola | cytosol | 25.48 | 26.91 |
| CDY40538 | Canola | cytosol | 26.62 | 26.42 |
| CDX90513 | Canola | cytosol | 24.71 | 26.0 |
| CDY32266 | Canola | cytosol | 22.05 | 25.78 |
| CDY09678 | Canola | cytosol | 26.62 | 25.64 |
| CDY40537 | Canola | cytosol | 21.67 | 25.33 |
| CDX90509 | Canola | cytosol | 25.48 | 25.28 |
| CDY50905 | Canola | cytosol | 26.62 | 24.73 |
| CDY09703 | Canola | plastid | 23.95 | 24.71 |
| CDY63876 | Canola | cytosol | 23.95 | 24.23 |
| CDX90512 | Canola | cytosol | 22.81 | 24.19 |
| CDY09677 | Canola | extracellular | 12.55 | 24.09 |
| CDY09683 | Canola | cytosol | 11.79 | 22.46 |
| CDY46005 | Canola | mitochondrion | 14.07 | 22.29 |
| CDX90508 | Canola | extracellular | 11.79 | 21.99 |
| CDY46006 | Canola | cytosol | 19.39 | 20.32 |
Protein Annotations
| EnsemblPlants:CDX80270 | EnsemblPlantsGene:GSBRNA2T00133253001 | Gene3D:2.60.40.790 | InterPro:HSP20 | InterPro:HSP20-like_chaperone | InterPro:IPR008978 |
| PANTHER:PTHR11527 | PANTHER:PTHR11527:SF95 | ProteinID:CDX80270 | ProteinID:CDX80270.1 | SUPFAM:SSF49764 | UniParc:UPI0004EF0CB6 |
| MapMan:35.1 | : | : | : | : | : |
Description
BnaC09g34720D
Coordinates
chrLK031820:-:1000530..1002649
Molecular Weight (calculated)
29674.1 Da
IEP (calculated)
6.415
GRAVY (calculated)
-0.506
Length
263 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAYIDMSRI PYIPGTLHAT NNPYQRYGPK GFMEIKVLNN DNLYVRVDLP GVPDDAIRYR VDAVRQKVVF FSGEETHRDG YKAEDVREYS GTAGLGCDCC
101: EITGVDAKMK DGVLRMILAR VKVKDHDNKC THFLPPNTGK SGRYDVNSFN WVEVEGHPFV VKGRKDTLAS QRTSDGCFHF SVDMPGVCGD DMFVLPNENE
201: IKFYGENKEV HEHDESCRIF LGAVSNRQCC SYGIPLLNHN ISWDAEFGVL KVRVSPPPRN NNE
101: EITGVDAKMK DGVLRMILAR VKVKDHDNKC THFLPPNTGK SGRYDVNSFN WVEVEGHPFV VKGRKDTLAS QRTSDGCFHF SVDMPGVCGD DMFVLPNENE
201: IKFYGENKEV HEHDESCRIF LGAVSNRQCC SYGIPLLNHN ISWDAEFGVL KVRVSPPPRN NNE
001: MGETKADFRD MSRIPKVREG FYATNNQFQK AGPKGFVQVK VLENDNLYVR VDLPGVPDDA VRYRVDAVRQ KVVFFSGETL NNGKEGVRQY SGTAGLGCDC
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE
101: CEITGVDAKM KDGVLRMILT RVKVVSKAQD NNNNKCTLTV PPFTGQSGIR LEDHPCLVSG RKGALIGVTK AGGGAHFAVD MPGVSPDDVE VYADEKEIRF
201: KAEIKDVYEH DESGRTYLGS VQSPFPALIS NNTIAWDAEF GVLRIAVIPP DDMTTINNKR NPIE
Arabidopsis Description
Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q9FGJ8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.