CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008244.1-P	Field mustard	cytosol	97.88	97.88
CDY46005	Canola	mitochondrion	38.87	66.27
CDY09678	Canola	cytosol	50.53	52.38
CDY46006	Canola	cytosol	45.58	51.39
CDX90509	Canola	cytosol	42.4	45.28
CDX90510	Canola	cytosol	41.34	44.66
CDY09679	Canola	cytosol	38.87	44.18
CDY09677	Canola	extracellular	21.2	43.8
CDY32265	Canola	cytosol	39.93	42.64
CDX90508	Canola	extracellular	21.2	42.55
CDY32266	Canola	cytosol	32.86	41.33
CDY40538	Canola	cytosol	38.52	41.13
CDY40537	Canola	cytosol	32.16	40.44
CDY50850	Canola	cytosol	37.81	40.38
CDY53640	Canola	cytosol	37.81	40.38
CDY09681	Canola	cytosol	31.1	38.26
CDX90513	Canola	cytosol	31.8	36.0
CDY63876	Canola	cytosol	32.86	35.77
CDY09703	Canola	plastid	31.45	34.9
CDY09683	Canola	cytosol	16.61	34.06
CDX90512	Canola	cytosol	28.62	32.66
CDX77784	Canola	cytosol	26.86	29.57
CDX77781	Canola	cytosol	25.8	28.19
CDX77719	Canola	cytosol	22.61	27.95
CDY17724	Canola	cytosol	24.73	27.78
CDX77779	Canola	cytosol	25.09	27.52
CDY17722	Canola	cytosol	25.09	27.31
CDX77721	Canola	cytosol	25.8	27.24
CDY37163	Canola	mitochondrion	18.73	27.04
CDX80270	Canola	cytosol	24.73	26.62
CDY43629	Canola	cytosol	17.67	26.45
CDY56707	Canola	cytosol	24.38	26.14
CDY41336	Canola	cytosol	24.38	25.94
CDY53682	Canola	cytosol	24.03	25.76
CDY67243	Canola	cytosol	15.9	25.28
CDY37166	Canola	cytosol	20.14	25.11
CDX87694	Canola	cytosol	17.31	25.0
CDX84467	Canola	cytosol	9.19	24.07
CDY37164	Canola	mitochondrion	14.84	23.08
CDY33502	Canola	cytosol	20.85	22.26
CDY33037	Canola	cytosol	24.03	20.18
CDY43630	Canola	cytosol	7.42	18.1

Protein Annotations

EnsemblPlants:CDY50905	EnsemblPlantsGene:GSBRNA2T00097750001	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	PFscan:PS01031	ProteinID:CDY50905
ProteinID:CDY50905.1	SUPFAM:SSF49764	UniParc:UPI0004EE2509	UniProt:A0A078IIM1	MapMan:35.1	:

Description

BnaCnng19970DBnaCnng19970D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IIM1]

Coordinates

chrLK032947:-:80307..82266

Molecular Weight (calculated)

30473.1 Da

IEP (calculated)

5.384

GRAVY (calculated)

-0.166

Length

283 amino acids

Sequence
(BLAST)

001: MEIRFVEPVP QSEGMYYATN NPYQVNGPKG FTEFKVLDGT AKLFVRIDFP GVSNDSVKIL LDPSQKAVFV SGEAPQEMVY DASLREFGTA TGLLCDCCRI
101: TDVESVLGDG VLRLILSKET IDFRVGSSCS ARAYTSVRAS SSLSRLIRGY DPEVAGGHPL AHLRGHGPQG HRGTGPLDPA FTGPDIVPNP LVQTGSTSAY
201: ESKQLSDGGI FLRIDMPGVP NDKFAVTVEN GCVTVTGRAP AAMDDSSGRE YRGNVAVVPR DYDSRRIEAF ANEGVIRLII HSI

Best Arabidopsis Sequence Match ( AT4G16550.1 )
(BLAST)

001: MSIPHIAPVP HPRDGYYATN NPYQVNGPKG FTEFKYLEET HDLFVRLDFP GIQKESVIIL LEPSKKAVIV TGEAPKESKH DSSHRKYGTA TGLICDCCEI
101: SNIQCFVGDG VVRLILSKQK INLRVPIFCS FGGARMPTDA SPNIIRGYNP EVAGGHPLAH LRGLNPEGCR GTDPFDPAFT GPTIRPHPSV LEGSTSAYET
201: KQLSNGGLYL RIDMPGVPSD GFIVAVDGNG VVTIMGRAPA TMHDSSGRSY VCKVAIVPRG YAGVGSR

Arabidopsis Description

HSP20-like chaperone [Source:TAIR;Acc:AT4G16550]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.