CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09679	Canola	cytosol	92.75	97.59
AT4G16545.1	Thale cress	cytosol	66.79	66.79
CDY53640	Canola	cytosol	65.27	64.53
CDY50850	Canola	cytosol	64.5	63.77
Bra012705.1-P	Field mustard	cytosol	96.18	63.16
CDY32265	Canola	cytosol	58.78	58.11
CDY40538	Canola	cytosol	57.63	56.98
CDY09677	Canola	extracellular	29.77	56.93
CDX90508	Canola	extracellular	29.01	53.9
CDY63876	Canola	cytosol	51.15	51.54
CDY40537	Canola	cytosol	43.89	51.11
CDY32266	Canola	cytosol	43.89	51.11
CDY09678	Canola	cytosol	48.47	46.52
CDY09681	Canola	cytosol	38.55	43.91
CDX90513	Canola	cytosol	39.69	41.6
CDY50905	Canola	cytosol	44.66	41.34
CDY46005	Canola	mitochondrion	25.95	40.96
CDX90509	Canola	cytosol	41.22	40.75
CDY09703	Canola	plastid	39.31	40.39
CDX90512	Canola	cytosol	37.79	39.92
CDY09683	Canola	cytosol	20.61	39.13
CDX77779	Canola	cytosol	32.44	32.95
CDY17724	Canola	cytosol	30.53	31.75
CDX77784	Canola	cytosol	30.53	31.13
CDY37163	Canola	mitochondrion	21.76	29.08
CDX77781	Canola	cytosol	28.63	28.96
CDY41336	Canola	cytosol	29.39	28.95
CDY43629	Canola	cytosol	20.61	28.57
CDX80270	Canola	cytosol	28.63	28.52
CDY56707	Canola	cytosol	28.63	28.41
CDX77719	Canola	cytosol	24.81	28.38
CDY17722	Canola	cytosol	27.86	28.08
CDX77721	Canola	cytosol	28.63	27.99
CDY53682	Canola	cytosol	27.86	27.65
CDX87694	Canola	cytosol	20.23	27.04
CDY37166	Canola	cytosol	22.9	26.43
CDX84467	Canola	cytosol	10.69	25.93
CDY33502	Canola	cytosol	25.57	25.28
CDY67243	Canola	cytosol	16.79	24.72
CDY46006	Canola	cytosol	23.66	24.7
CDY37164	Canola	mitochondrion	16.41	23.63
CDY33037	Canola	cytosol	27.48	21.36
CDY43630	Canola	cytosol	8.02	18.1

Protein Annotations

EnsemblPlants:CDX90510	EnsemblPlantsGene:GSBRNA2T00151135001	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR008978	PANTHER:PTHR11527
PANTHER:PTHR11527:SF95	ProteinID:CDX90510	ProteinID:CDX90510.1	SUPFAM:SSF49764	UniParc:UPI0004EDECCE	MapMan:35.1

Description

BnaA03g42710D

Coordinates

chrLK031863:+:623079..624520

Molecular Weight (calculated)

28246.1 Da

IEP (calculated)

7.534

GRAVY (calculated)

-0.164

Length

262 amino acids

Sequence
(BLAST)

001: MVVPLTVAPP SRAEGFYAVN NPFLVSGPKG FTEFKMLENE DMFIRIDFPG VPQDAIKVRI DPTKKAVSIT ADAPKEHKHD SAPRNYGSAT GLVCKCCEIS
101: GLVSHMSDGV LRLHLSKTRA STQSPSCISF LGGPDREDRC STGPHTFPHG TDPHDPELTG PLLEPHPCVN IGSDMAYEWK ILPNGGLYVR VDMPGVPKDR
201: FTVSVVNGRV MVTGDAPAVS LDSGGRFYSG EVAMLESQVS IPGRKIKTIA KNGVIRLIIP PL

Best Arabidopsis Sequence Match ( AT4G16545.1 )
(BLAST)

001: MVVPLRAIPS SREGFYAINN QFQANGPKGF MEFKMLENED MYVRIDFPGV PRDGVRVFLD QSKKAVCIFA DAPKEHKYDY SERNYGTSTG LVCKCCEISG
101: FTSFMSDGVL RLLLTKSNIT PQRSSCISFL AGPDFREDLR GNGPHKFPHG TDPNDPKLTG RILMPHPCVN YGSEMAYESK QLQNGGLYVR VDMPGVPKEN
201: FTVAVMNGRV RVTGEAPAIS HDSSGRFYTG DVAMLSTPFD IPIRKIKIIA KNGVIRLIIP PV

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family protein [Source:UniProtKB/TrEMBL;Acc:A0A1P8B7R1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.