CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
mitochondrion 1
extracellular 3
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	extracellular, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90508	Canola	extracellular	94.16	91.49
Bra012704.1-P	Field mustard	cytosol, extracellular, vacuole	89.05	85.92
CDY32266	Canola	cytosol	59.85	36.44
CDY40537	Canola	cytosol	59.85	36.44
AT2G03020.1	Thale cress	cytosol	64.23	34.51
AT4G16540.1	Thale cress	cytosol	58.39	34.48
CDY32265	Canola	cytosol	64.23	33.21
CDY09683	Canola	cytosol	32.85	32.61
CDY40538	Canola	cytosol	62.77	32.45
CDY46005	Canola	mitochondrion	37.96	31.33
CDY09679	Canola	cytosol	56.2	30.92
CDY53640	Canola	cytosol	57.66	29.81
CDX90510	Canola	cytosol	56.93	29.77
CDY50850	Canola	cytosol	56.93	29.43
CDX84467	Canola	cytosol	21.9	27.78
CDY63876	Canola	cytosol	51.82	27.31
CDY09678	Canola	cytosol	43.8	21.98
CDY09703	Canola	plastid	40.88	21.96
CDX90512	Canola	cytosol	38.69	21.37
CDY50905	Canola	cytosol	43.8	21.2
CDX90513	Canola	cytosol	38.69	21.2
CDY09681	Canola	cytosol	32.85	19.57
CDY37164	Canola	mitochondrion	21.9	16.48
CDY43630	Canola	cytosol	13.87	16.38
CDX90509	Canola	cytosol	29.93	15.47
CDY17724	Canola	cytosol	27.74	15.08
CDY43629	Canola	cytosol	20.44	14.81
CDX87694	Canola	cytosol	21.17	14.8
CDX77779	Canola	cytosol	27.74	14.73
CDX77784	Canola	cytosol	27.01	14.4
CDY53682	Canola	cytosol	27.01	14.02
CDX77721	Canola	cytosol	26.28	13.43
CDX77781	Canola	cytosol	24.82	13.13
CDY33502	Canola	cytosol	24.82	12.83
CDY41336	Canola	cytosol	24.82	12.78
CDY37166	Canola	cytosol	21.17	12.78
CDX80270	Canola	cytosol	24.09	12.55
CDY56707	Canola	cytosol	24.09	12.5
CDY17722	Canola	cytosol	22.63	11.92
CDX77719	Canola	cytosol	19.71	11.79
CDY67243	Canola	cytosol	13.14	10.11
CDY33037	Canola	cytosol	24.82	10.09
CDY37163	Canola	mitochondrion	13.14	9.18
CDY46006	Canola	cytosol	15.33	8.37

Protein Annotations

EnsemblPlants:CDY09677	EnsemblPlantsGene:GSBRNA2T00031345001	Gene3D:2.60.40.790	InterPro:A-crystallin/Hsp20_dom	InterPro:HSP20	InterPro:HSP20-like_chaperone
InterPro:IPR002068	InterPro:IPR008978	PANTHER:PTHR11527	PANTHER:PTHR11527:SF95	PFscan:PS01031	ProteinID:CDY09677
ProteinID:CDY09677.1	SUPFAM:SSF49764	UniParc:UPI0004EF26B0	UniProt:A0A078F9D6	MapMan:35.1	:

Description

BnaC07g33840DBnaC07g33840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F9D6]

Coordinates

chrLK031998:+:416082..417111

Molecular Weight (calculated)

14610.8 Da

IEP (calculated)

8.051

GRAVY (calculated)

0.141

Length

137 amino acids

Sequence
(BLAST)

001: MSDGVLRLVL SKTCTDPSSC ICTLLKMYLL FSLSDLVGLS GDNTDDHAGK VYESNQLENG SLYVRLDMPG VPKDNFAVTV ANGIVKVTGQ APSVSHDSAG
101: RFYSGDVAML SAPVNIPSRR IKTIAKNGVI RLLIPPL

Best Arabidopsis Sequence Match ( AT2G03020.1 )
(BLAST)

001: MAMAVPVSAR PQSPEGFYAI NNQFQTNGPK GFSEIKILAN EDMFLRMDLP GVPDEGGLSV YHNRSQETVV VFAKAPKVHT HDSTERRYQT MTGIGCSCCA
101: ISSITTHMSD GVFRVILSKT RIDPHRSPCT VLGCSGFRED LRGTDPNDPA LTGPVLQPHP LAFPQPTMAY ESKQLPNGKL FVRADMPGVP KENFTVSVTN
201: GRVKVTGQAP AVSHDSSGRF YSGDVAMLST PVDIPSRRIK TIAKNGVIRL LIPPF

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q84X24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.