CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytoskeleton, cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytoskeleton
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90512	Canola	cytosol	71.74	66.53
CDX90513	Canola	cytosol	45.22	41.6
CDY09703	Canola	plastid	45.65	41.18
CDY50850	Canola	cytosol	46.09	40.0
CDY53640	Canola	cytosol	45.65	39.62
CDX90510	Canola	cytosol	43.91	38.55
CDY09679	Canola	cytosol	40.87	37.75
CDY32265	Canola	cytosol	43.04	37.36
CDY32266	Canola	cytosol	34.78	35.56
CDY40537	Canola	cytosol	34.35	35.11
CDY63876	Canola	cytosol	39.57	35.0
CDY09683	Canola	cytosol	20.87	34.78
CDY40538	Canola	cytosol	40.0	34.72
CDY09677	Canola	extracellular	19.57	32.85
CDY09678	Canola	cytosol	38.7	32.6
CDX90508	Canola	extracellular	19.57	31.91
CDX90509	Canola	cytosol	36.52	31.7
CDY43629	Canola	cytosol	25.65	31.22
CDY50905	Canola	cytosol	38.26	31.1
CDY37163	Canola	mitochondrion	25.22	29.59
CDX77784	Canola	cytosol	31.74	28.4
CDX77719	Canola	cytosol	27.83	27.95
CDY46005	Canola	mitochondrion	20.0	27.71
CDX87694	Canola	cytosol	23.48	27.55
CDX77781	Canola	cytosol	30.87	27.41
CDY17724	Canola	cytosol	30.0	27.38
CDY17722	Canola	cytosol	30.87	27.31
CDX77779	Canola	cytosol	30.43	27.13
CDY67243	Canola	cytosol	20.87	26.97
CDY53682	Canola	cytosol	30.87	26.89
CDY37166	Canola	cytosol	25.65	25.99
CDY56707	Canola	cytosol	29.57	25.76
CDX77721	Canola	cytosol	30.0	25.75
CDY41336	Canola	cytosol	29.13	25.19
CDX80270	Canola	cytosol	28.7	25.1
CDY37164	Canola	mitochondrion	17.83	22.53
CDX84467	Canola	cytosol	10.43	22.22
CDY46006	Canola	cytosol	23.48	21.51
CDY33502	Canola	cytosol	24.78	21.51
CDY33037	Canola	cytosol	27.83	18.99
CDY43630	Canola	cytosol	6.96	13.79

Protein Annotations

EnsemblPlants:CDY09681	EnsemblPlantsGene:GSBRNA2T00031349001	InterPro:HSP20	InterPro:HSP20-like_chaperone	InterPro:IPR008978	PANTHER:PTHR11527
PANTHER:PTHR11527:SF95	ProteinID:CDY09681	ProteinID:CDY09681.1	SEG:seg	SUPFAM:SSF49764	UniParc:UPI0004EF2717
UniProt:A0A078F8L8	MapMan:35.2	:	:	:	:

Description

BnaC07g33800DBnaC07g33800D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F8L8]

Coordinates

chrLK031998:+:435192..436389

Molecular Weight (calculated)

24996.5 Da

IEP (calculated)

4.249

GRAVY (calculated)

-0.157

Length

230 amino acids

Sequence
(BLAST)

001: MLIGAEGFYA INNPFQTNGP KWFSEIKWLD FDMYLRMDLP GVGSDPDVVD ISVDDSKKGV TIKALAPCLN INDSFPRSYD TYIGLGCHCC EISSVDNPQV
101: TDGVLRLILS TTPIKGDDGA PGPPQQEIHS LLFLGTDPYA DPESTGKILQ PHPGLSEGPA SAYEYKQLLD GSVYVRLDMP GVSDVDINVD FVNYRLIVVG
201: DAPTVSHDSG GRSVEHNVEN GVVRLFIHPT

Best Arabidopsis Sequence Match ( AT2G03020.1 )
(BLAST)

001: MAMAVPVSAR PQSPEGFYAI NNQFQTNGPK GFSEIKILAN EDMFLRMDLP GVPDEGGLSV YHNRSQETVV VFAKAPKVHT HDSTERRYQT MTGIGCSCCA
101: ISSITTHMSD GVFRVILSKT RIDPHRSPCT VLGCSGFRED LRGTDPNDPA LTGPVLQPHP LAFPQPTMAY ESKQLPNGKL FVRADMPGVP KENFTVSVTN
201: GRVKVTGQAP AVSHDSSGRF YSGDVAMLST PVDIPSRRIK TIAKNGVIRL LIPPF

Arabidopsis Description

Heat shock protein HSP20/alpha crystallin family [Source:UniProtKB/TrEMBL;Acc:Q84X24]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.