Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 6
- vacuole 5
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033657.1-P | Field mustard | extracellular | 99.13 | 99.13 |
| CDY22370 | Canola | extracellular | 98.91 | 98.91 |
| CDY25228 | Canola | extracellular | 93.48 | 93.48 |
| AT5G43060.1 | Thale cress | endoplasmic reticulum | 89.78 | 89.2 |
| CDY17093 | Canola | endoplasmic reticulum | 79.57 | 80.09 |
| CDY06760 | Canola | endoplasmic reticulum | 79.57 | 80.09 |
| CDY17044 | Canola | endoplasmic reticulum | 78.48 | 78.65 |
| CDY63586 | Canola | endoplasmic reticulum | 78.26 | 78.43 |
| VIT_18s0001g09990.t01 | Wine grape | endoplasmic reticulum | 72.17 | 71.09 |
| CDY17193 | Canola | endoplasmic reticulum | 49.13 | 71.07 |
| GSMUA_Achr3P01000_001 | Banana | endoplasmic reticulum | 68.48 | 67.16 |
| KXG27269 | Sorghum | endoplasmic reticulum | 67.39 | 66.81 |
| KRH05634 | Soybean | endoplasmic reticulum | 68.91 | 66.6 |
| GSMUA_Achr4P06140_001 | Banana | endoplasmic reticulum | 67.61 | 66.31 |
| GSMUA_Achr10P... | Banana | endoplasmic reticulum | 67.39 | 66.1 |
| CDY27951 | Canola | endoplasmic reticulum | 65.65 | 65.8 |
| PGSC0003DMT400020654 | Potato | cytosol | 63.26 | 65.69 |
| GSMUA_Achr4P12910_001 | Banana | endoplasmic reticulum | 67.39 | 65.54 |
| Zm00001d002065_P006 | Maize | plasma membrane | 66.52 | 65.38 |
| Zm00001d026458_P002 | Maize | endoplasmic reticulum | 68.04 | 65.21 |
| GSMUA_Achr1P15920_001 | Banana | endoplasmic reticulum | 65.87 | 64.47 |
| TraesCS2A01G512100.1 | Wheat | extracellular | 64.57 | 64.43 |
| TraesCS2B01G540100.2 | Wheat | golgi | 64.78 | 64.36 |
| TraesCS2D01G513600.1 | Wheat | endoplasmic reticulum, golgi, vacuole | 64.57 | 64.15 |
| KRH15406 | Soybean | nucleus | 69.13 | 64.11 |
| Solyc12g088670.1.1 | Tomato | endoplasmic reticulum | 63.91 | 63.09 |
| Solyc04g078540.2.1 | Tomato | endoplasmic reticulum | 64.35 | 62.71 |
| KRH61341 | Soybean | endoplasmic reticulum, extracellular, vacuole | 49.78 | 62.4 |
| CDY02431 | Canola | nucleus | 60.65 | 62.14 |
| CDY46179 | Canola | endoplasmic reticulum | 60.65 | 62.0 |
| GSMUA_Achr8P03350_001 | Banana | endoplasmic reticulum, extracellular, vacuole | 44.78 | 61.86 |
| HORVU2Hr1G113460.2 | Barley | plasma membrane | 65.65 | 61.76 |
| CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 59.57 | 61.02 |
| CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 59.57 | 61.02 |
| CDX75633 | Canola | vacuole | 48.91 | 60.16 |
| CDY22445 | Canola | vacuole | 48.7 | 59.89 |
| CDX69285 | Canola | endoplasmic reticulum, vacuole | 48.48 | 59.63 |
| CDY39574 | Canola | cytosol, endoplasmic reticulum, nucleus | 36.96 | 57.82 |
| GSMUA_Achr1P09800_001 | Banana | endoplasmic reticulum | 59.13 | 57.51 |
| CDY44047 | Canola | vacuole | 47.83 | 57.29 |
| GSMUA_AchrUn_... | Banana | endoplasmic reticulum, extracellular, golgi | 41.09 | 55.1 |
| CDY50154 | Canola | endoplasmic reticulum | 52.61 | 55.0 |
| CDX99227 | Canola | endoplasmic reticulum | 60.0 | 54.44 |
| CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 51.96 | 54.32 |
| CDY63262 | Canola | extracellular, plasma membrane, vacuole | 29.13 | 54.03 |
| CDY31861 | Canola | endoplasmic reticulum | 41.09 | 53.54 |
| CDY37617 | Canola | endoplasmic reticulum, extracellular | 43.04 | 53.51 |
| CDY25281 | Canola | extracellular | 43.04 | 53.37 |
| CDY25283 | Canola | vacuole | 43.04 | 53.08 |
| CDY01351 | Canola | endoplasmic reticulum | 40.43 | 52.99 |
| CDX75496 | Canola | endoplasmic reticulum | 40.43 | 52.25 |
| CDY16132 | Canola | endoplasmic reticulum, extracellular, vacuole | 43.04 | 52.24 |
| CDY48168 | Canola | endoplasmic reticulum | 39.78 | 50.97 |
| CDY34045 | Canola | endoplasmic reticulum | 40.0 | 50.97 |
| CDY33651 | Canola | endoplasmic reticulum | 36.09 | 50.92 |
| CDX96617 | Canola | endoplasmic reticulum | 36.09 | 50.76 |
| CDX83168 | Canola | endoplasmic reticulum | 39.78 | 50.69 |
| CDY58055 | Canola | golgi, nucleus, plastid | 34.78 | 49.69 |
| CDX69132 | Canola | plastid | 40.87 | 49.47 |
| CDX93470 | Canola | plasma membrane | 46.96 | 48.76 |
| CDX94938 | Canola | extracellular, vacuole | 46.52 | 48.42 |
| CDY39575 | Canola | endoplasmic reticulum | 38.04 | 47.55 |
| CDX77621 | Canola | endoplasmic reticulum, extracellular | 35.0 | 46.94 |
| CDX87758 | Canola | endoplasmic reticulum | 35.0 | 46.53 |
| CDY50483 | Canola | endoplasmic reticulum | 35.0 | 46.53 |
| CDY31498 | Canola | cytosol | 27.61 | 42.47 |
Protein Annotations
| Gene3D:3.10.20.500 | Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:A0A078C407 | MEROPS:C01.A12 | EnsemblPlants:CDX71540 |
| ProteinID:CDX71540 | ProteinID:CDX71540.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00148508001 |
| InterPro:Granulin | InterPro:Granulin_sf | InterPro:IPR037277 | PFAM:PF00112 | PFAM:PF00396 | PFAM:PF08246 |
| PRINTS:PR00705 | ScanProsite:PS00139 | ScanProsite:PS00639 | ScanProsite:PS00640 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF523 |
| InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Pept_cys_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C |
| InterPro:Prot_inhib_I29 | SMART:SM00277 | SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SUPFAM:SSF57277 |
| SignalP:SignalP-noTM | UniParc:UPI0004EAFBE2 | SEG:seg | : | : | : |
Description
BnaC04g17750D
Coordinates
chrLK031793:-:2558479..2560926
Molecular Weight (calculated)
50582.6 Da
IEP (calculated)
5.748
GRAVY (calculated)
-0.466
Length
460 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSVKVTILL LAMMIGVSYA ADMSIISYDE KHHITAENER SDAEVARIYE AWMEKHGKKA QSNGLVGEEK DQRFEIFKDN LRFIDEHNNK NLSYKLGLTR
101: FADLTNEEYR SIYLGAKSKK RVLKTSDRYQ PRVGDAIPDS VDWRKEGAVA AVKDQGSCGS CWAFSTIGAV EGINKIVTGD LISLSEQELV DCDTSYNQGC
201: NGGLMDYAFE FIIKNGGIDT EEDYPYKAAD GRCDQTRKNA KVVTIDAYED VPENNEAALK KALANQPISV AIEAGGRAFQ LYSSGVFDGI CGTELDHGVV
301: AVGYGTENGK DYWIVRNSWG GSWGESGYIK MARNIAEPTG KCGIAMEASY PIKKGQNPPN PGPSPPSPIK PPTQCDKYYS CPESNTCCCL FKYGKYCFGW
401: GCCPLEAATC CDDNTSCCPH EYPVCNGDTC LMSKNSPFSV KALKRTPAKP FWAHSRKNIA
101: FADLTNEEYR SIYLGAKSKK RVLKTSDRYQ PRVGDAIPDS VDWRKEGAVA AVKDQGSCGS CWAFSTIGAV EGINKIVTGD LISLSEQELV DCDTSYNQGC
201: NGGLMDYAFE FIIKNGGIDT EEDYPYKAAD GRCDQTRKNA KVVTIDAYED VPENNEAALK KALANQPISV AIEAGGRAFQ LYSSGVFDGI CGTELDHGVV
301: AVGYGTENGK DYWIVRNSWG GSWGESGYIK MARNIAEPTG KCGIAMEASY PIKKGQNPPN PGPSPPSPIK PPTQCDKYYS CPESNTCCCL FKYGKYCFGW
401: GCCPLEAATC CDDNTSCCPH EYPVCNGDTC LMSKNSPFSV KALKRTPAKP FWAHSRKNIA
001: MGFLKLSPMI LLLAMIGVSY AMDMSIISYD ENHHITTETS RSDSEVERIY EAWMVEHGKK KMNQNGLGAE KDQRFEIFKD NLRFIDEHNT KNLSYKLGLT
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA
101: RFADLTNEEY RSMYLGAKPT KRVLKTSDRY QARVGDALPD SVDWRKEGAV ADVKDQGSCG SCWAFSTIGA VEGINKIVTG DLISLSEQEL VDCDTSYNQG
201: CNGGLMDYAF EFIIKNGGID TEADYPYKAA DGRCDQNRKN AKVVTIDSYE DVPENSEASL KKALAHQPIS VAIEAGGRAF QLYSSGVFDG LCGTELDHGV
301: VAVGYGTENG KDYWIVRNSW GNRWGESGYI KMARNIEAPT GKCGIAMEAS YPIKKGQNPP NPGPSPPSPI KPPTTCDKYF SCPESNTCCC LYKYGKYCFG
401: WGCCPLEAAT CCDDNSSCCP HEYPVCDVNR GTCLMSKNSP FSVKALKRTP AIPFWAKSRK HIA
Arabidopsis Description
RD21BProbable cysteine protease RD21B [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH8]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.