Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular, vacuole
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 6
- vacuole 6
- plasma membrane 5
- golgi 5
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024736.1-P | Field mustard | endoplasmic reticulum, extracellular | 98.15 | 100.0 |
| AT4G11310.1 | Thale cress | endoplasmic reticulum | 81.27 | 84.62 |
| CDY25281 | Canola | extracellular | 81.53 | 83.29 |
| AT4G11320.1 | Thale cress | endoplasmic reticulum | 80.74 | 82.48 |
| CDY37617 | Canola | endoplasmic reticulum, extracellular | 80.21 | 82.16 |
| CDY25283 | Canola | vacuole | 80.47 | 81.77 |
| CDY17193 | Canola | endoplasmic reticulum | 42.48 | 50.63 |
| CDY63262 | Canola | extracellular, plasma membrane, vacuole | 31.66 | 48.39 |
| CDY39574 | Canola | cytosol, endoplasmic reticulum, nucleus | 37.47 | 48.3 |
| CDY01351 | Canola | endoplasmic reticulum | 43.8 | 47.29 |
| CDY31861 | Canola | endoplasmic reticulum | 43.54 | 46.74 |
| CDY33651 | Canola | endoplasmic reticulum | 40.11 | 46.63 |
| CDX96617 | Canola | endoplasmic reticulum | 40.11 | 46.48 |
| CDX69285 | Canola | endoplasmic reticulum, vacuole | 45.65 | 46.26 |
| CDX75633 | Canola | vacuole | 45.12 | 45.72 |
| CDY22445 | Canola | vacuole | 45.12 | 45.72 |
| CDY44047 | Canola | vacuole | 44.59 | 44.01 |
| KXG20680 | Sorghum | endoplasmic reticulum, extracellular, vacuole | 41.16 | 43.58 |
| CDX75496 | Canola | endoplasmic reticulum | 40.63 | 43.26 |
| CDX71540 | Canola | extracellular | 52.24 | 43.04 |
| CDY22370 | Canola | extracellular | 52.24 | 43.04 |
| CDY25228 | Canola | extracellular | 51.98 | 42.83 |
| CDY17093 | Canola | endoplasmic reticulum | 51.45 | 42.67 |
| CDY06760 | Canola | endoplasmic reticulum | 50.66 | 42.01 |
| CDY58055 | Canola | golgi, nucleus, plastid | 35.36 | 41.61 |
| CDY17044 | Canola | endoplasmic reticulum | 50.4 | 41.61 |
| CDY48168 | Canola | endoplasmic reticulum | 39.31 | 41.5 |
| CDY63586 | Canola | endoplasmic reticulum | 50.13 | 41.39 |
| EER88857 | Sorghum | endoplasmic reticulum | 39.84 | 40.59 |
| CDX69132 | Canola | plastid | 40.37 | 40.26 |
| CDX83168 | Canola | endoplasmic reticulum | 38.26 | 40.17 |
| CDY34045 | Canola | endoplasmic reticulum | 37.99 | 39.89 |
| CDX77621 | Canola | endoplasmic reticulum, extracellular | 35.88 | 39.65 |
| EER88858 | Sorghum | golgi, vacuole | 41.16 | 39.29 |
| CDY39575 | Canola | endoplasmic reticulum | 37.73 | 38.86 |
| CDX87758 | Canola | endoplasmic reticulum | 35.36 | 38.73 |
| CDY50483 | Canola | endoplasmic reticulum | 35.36 | 38.73 |
| CDY31498 | Canola | cytosol | 30.34 | 38.46 |
| Zm00001d036542_P001 | Maize | endoplasmic reticulum, golgi | 41.16 | 38.42 |
| CDY46179 | Canola | endoplasmic reticulum | 44.59 | 37.56 |
| CDY50157 | Canola | endoplasmic reticulum, extracellular, vacuole | 44.06 | 37.19 |
| CDX95457 | Canola | endoplasmic reticulum, extracellular, vacuole | 44.06 | 37.19 |
| CDY50154 | Canola | endoplasmic reticulum | 41.69 | 35.91 |
| CDX95451 | Canola | endoplasmic reticulum, extracellular, vacuole | 41.42 | 35.68 |
| Zm00001d036541_P002 | Maize | extracellular, plasma membrane | 44.06 | 34.65 |
| CDX93470 | Canola | plasma membrane | 39.84 | 34.09 |
| CDX94938 | Canola | extracellular, vacuole | 39.31 | 33.71 |
| CDX99227 | Canola | endoplasmic reticulum | 44.59 | 33.33 |
| CDY27951 | Canola | endoplasmic reticulum | 39.05 | 32.24 |
| CDY02431 | Canola | nucleus | 36.41 | 30.73 |
Protein Annotations
| Gene3D:3.90.70.10 | MapMan:50.3.4 | GO:A0A078FTH2 | UniProt:A0A078FTH2 | EnsemblPlants:CDY16132 | ProteinID:CDY16132 |
| ProteinID:CDY16132.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006508 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008234 | GO:GO:0016787 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00090562001 | PFAM:PF00112 | PFAM:PF08246 |
| PRINTS:PR00705 | ScanProsite:PS00639 | ScanProsite:PS00640 | PFscan:PS51257 | PANTHER:PTHR12411 | PANTHER:PTHR12411:SF526 |
| InterPro:Papain_like_cys_pep_sf | InterPro:Pept_asp_AS | InterPro:Pept_his_AS | InterPro:Peptidase_C1A | InterPro:Peptidase_C1A_C | InterPro:Prot_inhib_I29 |
| SMART:SM00645 | SMART:SM00848 | SUPFAM:SSF54001 | SignalP:SignalP-noTM | TMHMM:TMhelix | UniParc:UPI0004EF297A |
Description
BnaA09g28660DBnaA09g28660D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTH2]
Coordinates
chrLK032061:+:36532..38230
Molecular Weight (calculated)
41804.5 Da
IEP (calculated)
7.538
GRAVY (calculated)
-0.342
Length
379 amino acids
Sequence
(BLAST)
(BLAST)
001: MGSAKSAMRI FLLAMLIASC ATAMDMSVVS YDYNHHVVGS SGHRVATGPS HSDSVFDAEA MLIFNSWMAK QGKVYNSVAE KERRLTIFKD NLRFITNRNA
101: ENLSYRLGLT RFADISLHEY TELCHGAAPK PPRNHVFMTS SDRYKTSAGD VLPKSVDWRN EGAMSEIKDQ GHCRSCWAFS TVGAVEGLNK IVTGVLVTLS
201: EQDLINCNKD NNGCEGGKVE TAYEFIVKNG GLGTTKDYPY KAVDGVCDAH LKENNKNFMI DGYENLPAND EHALRKAVAH QPITAIIDSS SREFQLYKSG
301: VFDGTCGTNL NHGVVVVGYG NEDGRDYWIV RNSWGNTWGE AGYMKMARNI VNPRGLCGIA MRASYPLKNS ISTDVRSMT
101: ENLSYRLGLT RFADISLHEY TELCHGAAPK PPRNHVFMTS SDRYKTSAGD VLPKSVDWRN EGAMSEIKDQ GHCRSCWAFS TVGAVEGLNK IVTGVLVTLS
201: EQDLINCNKD NNGCEGGKVE TAYEFIVKNG GLGTTKDYPY KAVDGVCDAH LKENNKNFMI DGYENLPAND EHALRKAVAH QPITAIIDSS SREFQLYKSG
301: VFDGTCGTNL NHGVVVVGYG NEDGRDYWIV RNSWGNTWGE AGYMKMARNI VNPRGLCGIA MRASYPLKNS ISTDVRSMT
001: MGYAKSAMLI FLLALVIASC ATAMDMSVVS SNDNHHVTAG PGRRQGIFDA EATLMFESWM VKHGKVYDSV AEKERRLTIF EDNLRFITNR NAENLSYRLG
101: LNRFADLSLH EYGEICHGAD PRPPRNHVFM TSSNRYKTSD GDVLPKSVDW RNEGAVTEVK DQGLCRSCWA FSTVGAVEGL NKIVTGELVT LSEQDLINCN
201: KENNGCGGGK VETAYEFIMN NGGLGTDNDY PYKALNGVCE GRLKEDNKNV MIDGYENLPA NDEAALMKAV AHQPVTAVVD SSSREFQLYE SGVFDGTCGT
301: NLNHGVVVVG YGTENGRDYW IVKNSRGDTW GEAGYMKMAR NIANPRGLCG IAMRASYPLK NSFSTDKVSV A
101: LNRFADLSLH EYGEICHGAD PRPPRNHVFM TSSNRYKTSD GDVLPKSVDW RNEGAVTEVK DQGLCRSCWA FSTVGAVEGL NKIVTGELVT LSEQDLINCN
201: KENNGCGGGK VETAYEFIMN NGGLGTDNDY PYKALNGVCE GRLKEDNKNV MIDGYENLPA NDEAALMKAV AHQPVTAVVD SSSREFQLYE SGVFDGTCGT
301: NLNHGVVVVG YGTENGRDYW IVKNSRGDTW GEAGYMKMAR NIANPRGLCG IAMRASYPLK NSFSTDKVSV A
Arabidopsis Description
RDL5Probable cysteine protease RDL5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUS9]
SUBAcon: [endoplasmic reticulum]
SUBAcon: [endoplasmic reticulum]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.