CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
golgi 2
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra001037.1-P	Field mustard	cytosol	100.0	100.0
CDX74267	Canola	cytosol	99.44	99.44
CDY34712	Canola	cytosol	98.88	98.88
CDY43248	Canola	cytosol, extracellular, peroxisome	98.6	98.6
CDY60468	Canola	cytosol, extracellular, peroxisome	98.32	98.32
AT3G02230.1	Thale cress	cytosol	96.92	96.92
CDY26446	Canola	cytosol	87.68	93.43
CDX69510	Canola	cytosol	87.39	93.13
CDX78646	Canola	plasma membrane	87.96	92.08
CDX90981	Canola	cytosol, extracellular, peroxisome	87.39	91.5
CDX85541	Canola	peroxisome	87.11	91.2
CDX70629	Canola	peroxisome	87.11	91.2
CDY27964	Canola	cytosol	64.43	80.7
CDX73947	Canola	cytosol	38.66	80.23
CDY00647	Canola	cytosol	63.87	78.08
CDY64941	Canola	cytosol	74.79	77.84
CDY34025	Canola	cytosol	75.35	74.93
CDX83155	Canola	cytosol	75.07	74.65
CDX69446	Canola	cytosol	48.46	49.71
CDY55583	Canola	cytosol	48.18	49.43
CDY27965	Canola	cytosol	3.36	46.15
CDX78695	Canola	cytosol	13.17	44.76
CDX85502	Canola	cytosol	13.45	44.44
CDY38107	Canola	cytosol	17.93	41.03

Protein Annotations

EnsemblPlants:CDX91983	EnsemblPlantsGene:GSBRNA2T00153635001	GO:A0A078DXI5	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0009987	GO:GO:0016866	GO:GO:0071669	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	InterPro:RGP
InterPro:RGP_fam	KEGG:00520+5.4.99.30	PANTHER:PTHR31682	PANTHER:PTHR31682:SF15	PFAM:PF03214	PIRSF:PIRSF016429
ProteinID:CDX91983	ProteinID:CDX91983.1	SUPFAM:SSF53448	UniParc:UPI0002540863	MapMan:3.13.7.3	:

Description

BnaC03g32850D

Coordinates

chrLK031870:+:1122141..1124426

Molecular Weight (calculated)

40448.9 Da

IEP (calculated)

5.702

GRAVY (calculated)

-0.126

Length

357 amino acids

Sequence
(BLAST)

001: MVEPANTVGI PLNHAALLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSSP LFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCVKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLSKEAV TVQQCYIELS KMVKEKLSAI DPYFDKLADA MVTWIEAWDE LNPATKA

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.