CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

cytosol 2
peroxisome 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, peroxisome
BaCelLo:	cytosol
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78646	Canola	plasma membrane	98.53	98.53
CDY26446	Canola	cytosol	96.48	98.21
CDX69510	Canola	cytosol	96.19	97.91
CDX90981	Canola	cytosol, extracellular, peroxisome	97.07	97.07
CDX85541	Canola	peroxisome	96.48	96.48
Bra006315.1-P	Field mustard	cytosol	97.36	91.46
AT5G15650.1	Thale cress	cytosol	95.31	90.28
CDY60468	Canola	cytosol, extracellular, peroxisome	91.79	87.68
CDY34712	Canola	cytosol	91.79	87.68
CDY43248	Canola	cytosol, extracellular, peroxisome	91.5	87.39
CDX91983	Canola	cytosol	91.2	87.11
CDX74267	Canola	cytosol	91.2	87.11
CDX73947	Canola	cytosol	40.76	80.81
CDY27964	Canola	cytosol	61.88	74.04
CDY64941	Canola	cytosol	73.31	72.89
CDY00647	Canola	cytosol	61.58	71.92
CDY34025	Canola	cytosol	73.9	70.19
CDX83155	Canola	cytosol	73.61	69.92
CDY27965	Canola	cytosol	3.81	50.0
CDX78695	Canola	cytosol	13.2	42.86
CDY55583	Canola	cytosol	43.11	42.24
CDX69446	Canola	cytosol	43.11	42.24
CDX85502	Canola	cytosol	13.2	41.67
CDY38107	Canola	cytosol	13.2	28.85

Protein Annotations

EnsemblPlants:CDX70629	EnsemblPlantsGene:GSBRNA2T00140478001	GO:A0A078C387	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	InterPro:RGP_fam
KEGG:00520+5.4.99.30	PANTHER:PTHR31682	PANTHER:PTHR31682:SF15	PFAM:PF03214	ProteinID:CDX70629	ProteinID:CDX70629.1
SUPFAM:SSF53448	UniParc:UPI0004EECF9B	MapMan:3.13.7.3	:	:	:

Description

BnaC03g07130D

Coordinates

chrLK031791:+:1311344..1313488

Molecular Weight (calculated)

38514.7 Da

IEP (calculated)

6.251

GRAVY (calculated)

-0.170

Length

341 amino acids

Sequence
(BLAST)

001: MVDPANTVGI PVNPTPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPTKKIH VPEGYDYELY NRNDVNRILG PKASCISFKD SACRCFGYMV
101: SKKKYVFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FLREGVSTAV SHGLWLNIPD YDAPTQLVKP KERNTRYVDA VMTIPKGTLF PMCGMNLAFD
201: RDLIGPAMYF GLMGDGQPIG RYDDMWAGWC IKVICDHLGL GVKTGLPYIY HSKASNPFVN LKKEYKGIFW QEDIIPFFQN VKLSKEATSV QQCYIELSKM
301: VKEKLSPLDP YFDKLADAMV TWIEAWDELN PPAAATVNGK A

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.