CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
BaCelLo:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27964	Canola	cytosol	80.47	96.84
CDX73947	Canola	cytosol	46.94	93.6
CDY00647	Canola	cytosol	77.26	90.75
Bra029728.1-P	Field mustard	cytosol	97.38	88.36
AT3G08900.1	Thale cress	cytosol	89.21	84.53
VIT_14s0083g01100.t01	Wine grape	cytosol	80.76	77.16
Solyc03g070390.2.1	Tomato	cytosol, unclear	76.97	75.43
PGSC0003DMT400068326	Potato	cytosol	77.26	75.28
Solyc02g089170.2.1	Tomato	cytosol, unclear	76.97	75.0
PGSC0003DMT400003478	Potato	cytosol	77.55	74.93
CDY60468	Canola	cytosol, extracellular, peroxisome	77.84	74.79
CDY34712	Canola	cytosol	77.84	74.79
CDX91983	Canola	cytosol	77.84	74.79
CDY43248	Canola	cytosol, extracellular, peroxisome	77.55	74.51
CDX74267	Canola	cytosol	77.26	74.23
CDY26446	Canola	cytosol	72.3	74.03
CDX69510	Canola	cytosol	72.3	74.03
CDX78646	Canola	plasma membrane	73.18	73.61
CDX90981	Canola	cytosol, extracellular, peroxisome	73.18	73.61
Solyc02g065740.2.1	Tomato	cytosol, unclear	76.97	73.54
CDX70629	Canola	peroxisome	72.89	73.31
CDX85541	Canola	peroxisome	72.89	73.31
CDY34025	Canola	cytosol	69.68	66.57
CDX83155	Canola	cytosol	69.39	66.3
CDY27965	Canola	cytosol	4.08	53.85
CDX78695	Canola	cytosol	13.7	44.76
CDY55583	Canola	cytosol	44.9	44.25
CDX69446	Canola	cytosol	44.61	43.97
CDX85502	Canola	cytosol	13.7	43.52
PGSC0003DMT400019802	Potato	cytosol	51.31	42.82
CDY38107	Canola	cytosol	16.91	37.18

Protein Annotations

EnsemblPlants:CDY64941	EnsemblPlantsGene:GSBRNA2T00043885001	GO:A0A078JGX7	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016866	GO:GO:0030244
InterPro:RGP_fam	KEGG:00520+5.4.99.30	PANTHER:PTHR31682	PANTHER:PTHR31682:SF14	PFAM:PF03214	ProteinID:CDY64941
ProteinID:CDY64941.1	UniParc:UPI0004EDF0DE	UniProt:A0A078JGX7	MapMan:3.13.7.3	:	:

Description

BnaA05g37110DBnaA05g37110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JGX7]

Coordinates

chrLK034604:+:9225..10758

Molecular Weight (calculated)

39091.3 Da

IEP (calculated)

5.743

GRAVY (calculated)

-0.219

Length

343 amino acids

Sequence
(BLAST)

001: MSQLYSSMKP TPMLKDELDI VIPTIRNLDF LEMNDINRIL GPKSSCISFK DSACRCFGYM VSKKKYIYTI DDDCFVAKDP SGKDINALEQ HIKNLLSPST
101: PHFFNTLYDP YGDGADFVRG YPFSMREGAI TAVSHGLWLN IPDYDAPTQL VKPLERNFRK VYLSIQLPIL YVDAVMTIPK GTLFPMCGMN LAFDRELIGP
201: AMYFGLMGDG QPIGRYDDMW AGWCVKVICD HMGWGVKTGL PYIWHSKASN PFVNLRKEYN GIFWQEEAIP FFQSVTLPKE CDSVQQCYIE LAKLVKEKLG
301: KVDPYFIKLA DRMVTWIEAW EELNAPKGTE TNAPKGKDEK VTE

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.