Factsheet for PGSC0003DMT400019802

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
golgi 2
cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY00647	Canola	cytosol	42.58	59.93
Solyc03g070390.2.1	Tomato	cytosol, unclear	50.37	59.14
PGSC0003DMT400068326	Potato	cytosol	45.5	53.12
PGSC0003DMT400003478	Potato	cytosol	45.5	52.68
PGSC0003DMT400072896	Potato	cytosol, mitochondrion	45.26	51.38
CDY64941	Canola	cytosol	42.82	51.31
PGSC0003DMT400004878	Potato	cytosol, extracellular	44.77	50.69
CDY27964	Canola	cytosol	35.04	50.53
VIT_14s0083g01100.t01	Wine grape	cytosol	44.04	50.42
PGSC0003DMT400063316	Potato	cytosol	44.53	50.14
Bra001338.1-P	Field mustard	cytosol	42.34	47.8
AT3G08900.1	Thale cress	cytosol	41.85	47.51
CDY27965	Canola	cytosol	2.92	46.15
Bra029728.1-P	Field mustard	cytosol	42.34	46.03
PGSC0003DMT400039494	Potato	cytosol	38.93	45.85
PGSC0003DMT400059506	Potato	cytosol	28.71	33.91

Protein Annotations

KEGG:00520+5.4.99.30	MapMan:3.13.7.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021
GO:GO:0016866	GO:GO:0030244	UniProt:M1ACL5	PFAM:PF03214	EnsemblPlantsGene:PGSC0003DMG400007653	PGSC:PGSC0003DMG400007653
EnsemblPlants:PGSC0003DMT400019802	PANTHER:PTHR31682	PANTHER:PTHR31682:SF15	InterPro:RGP_fam	TMHMM:TMhelix	UniParc:UPI0002957877

Description

Type IIIa membrane protein cp-wap13 [Source:PGSC_GENE;Acc:PGSC0003DMG400007653]

Coordinates

chr3:+:12357674..12359785

Molecular Weight (calculated)

44828.4 Da

IEP (calculated)

8.609

GRAVY (calculated)

0.933

Length

411 amino acids

Sequence
(BLAST)

001: MISKKKYIYT IDDDCFVAKD PSGKDTNALE QHIKNLLCPS TPFFFNTLYE PFRDGADFVR GYPFSLREGV PTAASHGLWL NIPDYDAPTQ LVKTLERNTS
101: LLDVMMICGL VGAARFVVVM MICGLVGAAR FVVVMMICGL VGAARFVVVM MICGLVGAAR FVVVMMICGL VGAARFVVVM MICGLVGAAR FVVVMMICGL
201: VGAARFVVVM MICGLVGAAR FVVVMMICGL VGAARFVVVM MICGLVGAAR FVVVMMICGL VGAARFVVVM MICGLVGAAR FVVVMMICGL VGAARFVVVM
301: MICGLVICDH LGLGIKTGLP YIYHSKASNP FVNLKKEYKG IFWQEEIIPF FQTLTLSKEF TSVQKCFIEL SRLAKEKLGT IDPYFLKLSE AMVTWIEAWD
401: ELNPPTKHSS K

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.