Factsheet for PGSC0003DMT400063316

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
golgi 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114860.2.1	Tomato	cytosol, extracellular, unclear	92.88	96.58
VIT_17s0000g05030.t01	Wine grape	cytosol	88.49	90.22
PGSC0003DMT400004878	Potato	cytosol, extracellular	87.95	88.43
PGSC0003DMT400068326	Potato	cytosol	84.93	88.07
KRH54738	Soybean	cytosol, endoplasmic reticulum	86.85	87.57
PGSC0003DMT400003478	Potato	cytosol	84.66	87.04
PGSC0003DMT400072896	Potato	cytosol, mitochondrion	86.03	86.74
KRH63176	Soybean	endoplasmic reticulum	85.48	85.71
GSMUA_Achr8P28120_001	Banana	cytosol	87.12	85.48
GSMUA_Achr4P14450_001	Banana	cytosol	76.71	85.11
CDX73947	Canola	cytosol	39.73	84.3
GSMUA_Achr3P25300_001	Banana	cytosol	66.03	83.68
PGSC0003DMT400039494	Potato	cytosol	77.81	81.38
PGSC0003DMT400059506	Potato	cytosol	47.4	49.71
Zm00001d012683_P001	Maize	cytosol, nucleus, peroxisome	42.74	46.43
PGSC0003DMT400019802	Potato	cytosol	50.14	44.53

Protein Annotations

KEGG:00520+5.4.99.30	EntrezGene:102584052	MapMan:3.13.7.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016866	GO:GO:0030244
GO:GO:0071669	InterPro:IPR029044	UniProt:M1CAG8	InterPro:Nucleotide-diphossugar_trans	PFAM:PF03214	EnsemblPlantsGene:PGSC0003DMG400024627
PGSC:PGSC0003DMG400024627	EnsemblPlants:PGSC0003DMT400063316	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF13	InterPro:RGP
InterPro:RGP_fam	SUPFAM:SSF53448	UniParc:UPI000295F68E	RefSeq:XP_006345104.1	:	:

Description

GRP 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400024627]

Coordinates

chr3:-:54834288..54836181

Molecular Weight (calculated)

41410.0 Da

IEP (calculated)

6.648

GRAVY (calculated)

-0.188

Length

365 amino acids

Sequence
(BLAST)

001: MAKPCVFASP SSTPLLKDEL DIVIPTIRNL DFLEMWRPFF QPYHLIIVQD GDPSKVIKVP EGFDYELYNR NDINKILGPK ASCISFKDSA CRCFGYMVSK
101: KKYIYTIDDD CFVAKDPTGK EINALEQHIK NLLCPSTPFF FNTLYDPYRD GADFVRGYPF SLREGVPTAV SHGLWLNIPD YDAPTQLVKP LERNTRYVDA
201: VMTIPKGTLF PMCGMNLAFD RELIGPAMYF GLMGDGQPIG RYDDMWAGWC IKVICDHLGL GVKTGLPYIW HSKASNPFVN LKKEYKGIYW QEELIPFFQS
301: VALPKECTSV QKCYLELSKQ VKAKLGKVDD YFNKLADAMI TWIEAWDDLN PSTATAAKLP NGSSK

Best Arabidopsis Sequence Match ( AT3G08900.1 )
(BLAST)

001: MAQLYSSVKP TPMLKDELDI VIPTIRNLDF LEMWRPFFEQ YHLIIVQDGD PSKVINIPVG FDYELYNRND INRILGPKAS CISFKDSACR CFGYMVSKKK
101: YIYTIDDDCF VAKDPTGKEI NALEQHIKNL LSPSTPHFFN TLYDPYRDGA DFVRGYPFSM REGAITAVSH GLWLNIPDYD APTQLVKPLE KNSRYVDAVM
201: TIPKGTLFPM CGMNLAFDRE LIGPAMYFGL MGDGQPIGRY DDMWAGWCVK VICDHMGWGV KTGLPYIWHS KASNPFVNLK KEYNGIFWQE EAIPFFQSVT
301: LPKECTSVQQ CYLELAKLVR EKLGKVDPYF ITLATGMVTW IEAWEELNSA EGTEAEAPKG KN

Arabidopsis Description

RGP3Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.