Factsheet for VIT_17s0000g05030.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion
BaCelLo:	cytosol
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g114860.2.1	Tomato	cytosol, extracellular, unclear	88.27	90.03
VIT_01s0011g00160.t01	Wine grape	cytosol	89.66	88.92
PGSC0003DMT400063316	Potato	cytosol	90.22	88.49
KRH54738	Soybean	cytosol, endoplasmic reticulum	87.99	87.02
VIT_14s0083g01100.t01	Wine grape	cytosol	87.15	86.91
KRH63176	Soybean	endoplasmic reticulum	87.43	85.99
GSMUA_Achr4P14450_001	Banana	cytosol	78.77	85.71
GSMUA_Achr8P28120_001	Banana	cytosol	88.55	85.22
VIT_17s0000g01290.t01	Wine grape	cytosol	86.59	83.78
GSMUA_Achr3P25300_001	Banana	cytosol	65.92	81.94
VIT_05s0020g03250.t01	Wine grape	cytosol	13.97	65.79
VIT_13s0106g00180.t01	Wine grape	cytosol	14.53	64.2
VIT_04s0023g00110.t01	Wine grape	cytosol	48.04	48.18

Protein Annotations

KEGG:00520+5.4.99.30	EntrezGene:100246811	wikigene:100246811	MapMan:3.13.7.3	EMBL:AM442866	ProteinID:CAN69560
ProteinID:CAN69560.1	ProteinID:CCB43151	ProteinID:CCB43151.1	UniProt:F6GTE2	EMBL:FN594950	GO:GO:0003674
GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794
GO:GO:0005829	GO:GO:0005975	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009832	GO:GO:0009987	GO:GO:0016866	GO:GO:0030244	GO:GO:0033356	GO:GO:0052691
GO:GO:0071669	InterPro:IPR029044	EntrezGene:LOC100246811	wikigene:LOC100246811	InterPro:Nucleotide-diphossugar_trans	PFAM:PF03214
PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF13	InterPro:RGP	InterPro:RGP_fam	SUPFAM:SSF53448
TIGR:TC52016	TIGR:TC62626	UniParc:UPI00015CC09B	ArrayExpress:VIT_17s0000g05030	EnsemblPlantsGene:VIT_17s0000g05030	EnsemblPlants:VIT_17s0000g05030.t01
unigene:Vvi.5073	RefSeq:XP_002263490	RefSeq:XP_002263490.1	:	:	:

Description

No Description!

Coordinates

chr17:-:5514104..5516864

Molecular Weight (calculated)

40799.2 Da

IEP (calculated)

6.657

GRAVY (calculated)

-0.241

Length

358 amino acids

Sequence
(BLAST)

001: MAGTPATPLL KDELDIVIPT IRNLDFLEMW RPFFQQYHLI IVQDGDPSKT IRVPDGFDYE LYNRNDINRI LGPKASCISF KDSACRCFGY LVSKKKYIYT
101: IDDDCFVAKD PSGKDINALE QHIKNLLAPS TPFFFNTLYD PYRDGADFVR GYPFSLREGV PTAVSHGLWL NIPDYDAPTQ LVKPRERNTR YVDAVMTIPK
201: GTLFPMCGMN LGFNRELIGP AMYFGLMGDG QPIGRYDDMW AGWCTKIICD HMGLGIKTGL PYIWHSKASN PFVNLKKEYK GIYWQEELIP FFQSVILPKE
301: CTTVQKCYIE LSKQVRAKLG KVDEYFIKLA DAMVTWIEAW DELNPSGASA EVRNGPAK

Best Arabidopsis Sequence Match ( AT3G08900.1 )
(BLAST)

001: MAQLYSSVKP TPMLKDELDI VIPTIRNLDF LEMWRPFFEQ YHLIIVQDGD PSKVINIPVG FDYELYNRND INRILGPKAS CISFKDSACR CFGYMVSKKK
101: YIYTIDDDCF VAKDPTGKEI NALEQHIKNL LSPSTPHFFN TLYDPYRDGA DFVRGYPFSM REGAITAVSH GLWLNIPDYD APTQLVKPLE KNSRYVDAVM
201: TIPKGTLFPM CGMNLAFDRE LIGPAMYFGL MGDGQPIGRY DDMWAGWCVK VICDHMGWGV KTGLPYIWHS KASNPFVNLK KEYNGIFWQE EAIPFFQSVT
301: LPKECTSVQQ CYLELAKLVR EKLGKVDPYF ITLATGMVTW IEAWEELNSA EGTEAEAPKG KN

Arabidopsis Description

RGP3Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6U1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.