Factsheet for VIT_04s0023g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
golgi 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g051200.1.1	Tomato	cytosol, unclear	71.99	73.85
PGSC0003DMT400059506	Potato	cytosol	71.99	73.85
AT5G16510.2	Thale cress	cytosol	65.55	67.24
CDX69446	Canola	cytosol	65.55	67.24
CDY55583	Canola	cytosol	65.27	66.95
Bra008616.1-P	Field mustard	cytosol	65.27	66.95
Os04t0660400-01	Rice	cytosol, plasma membrane, plastid	62.75	64.55
EES11595	Sorghum	cytosol	62.18	63.79
TraesCS2D01G498900.1	Wheat	cytosol, golgi, unclear	61.34	62.93
TraesCS2A01G498600.1	Wheat	cytosol, unclear	61.34	62.93
TraesCS2B01G526700.1	Wheat	cytosol, golgi	61.06	62.64
HORVU2Hr1G111070.2	Barley	cytosol	60.78	62.36
KRH40343	Soybean	cytosol, extracellular, plastid	73.39	61.36
KRH00886	Soybean	cytosol, peroxisome, plastid	72.83	60.89
Bra023571.1-P	Field mustard	cytosol	17.09	57.55
CDX85502	Canola	cytosol	17.37	57.41
Bra006359.1-P	Field mustard	cytosol	16.53	56.19
CDX78695	Canola	cytosol	16.25	55.24
CDY38107	Canola	cytosol	23.81	54.49
GSMUA_Achr7P00470_001	Banana	cytosol	49.86	51.74
Zm00001d001979_P002	Maize	extracellular, vacuole	60.78	51.3
VIT_01s0011g00160.t01	Wine grape	cytosol	50.14	49.58
VIT_14s0083g01100.t01	Wine grape	cytosol	49.02	48.75
VIT_17s0000g05030.t01	Wine grape	cytosol	48.18	48.04
VIT_17s0000g01290.t01	Wine grape	cytosol	47.9	46.22
VIT_13s0106g00180.t01	Wine grape	cytosol	8.12	35.8
VIT_05s0020g03250.t01	Wine grape	cytosol	7.56	35.53

Protein Annotations

KEGG:00520+5.4.99.30	EntrezGene:100246089	wikigene:100246089	MapMan:3.13.7.3	ProteinID:CCB44519	ProteinID:CCB44519.1
UniProt:F6GX33	EMBL:FN594959	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0005975	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009832	GO:GO:0009987	GO:GO:0016866
GO:GO:0030244	GO:GO:0033356	GO:GO:0052691	GO:GO:0071669	EntrezGene:LOC100246089	wikigene:LOC100246089
PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682	PANTHER:PTHR31682:SF4	InterPro:RGP	InterPro:RGP_fam
TIGR:TC57008	UniParc:UPI00015CA6A5	ArrayExpress:VIT_04s0023g00110	EnsemblPlantsGene:VIT_04s0023g00110	EnsemblPlants:VIT_04s0023g00110.t01	unigene:Vvi.1499
RefSeq:XP_002279911	RefSeq:XP_002279911.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr4:-:16084017..16085284

Molecular Weight (calculated)

39632.5 Da

IEP (calculated)

6.399

GRAVY (calculated)

-0.045

Length

357 amino acids

Sequence
(BLAST)

001: MSQTNIGDDE VDIVIGALHA DLTSFLNEWR PLFSRFHLII VKDPDLREEL KIPEGFNLHV YTKSDIDRVV GSSYTAINFS GYSCRYFGYL MSRKKYIFSV
101: DDDCIPAKDD KGLSVDAVDQ HITNLATPAT PFFFNTLYDP FRKGTDFVRG YPFSLRSGVT CALSCGLWLN LADHDAPTQA LKPGHRNSRY VDAVLTVPAR
201: ALMPVSGVNI AFNRELAGPA LFPGLRLAAE GKLRWETVED IWCGLCVKVV CDHLGLGVKT GLPYVWRNDR GNAIESLKKE WEGVKLMEEV VPFFQSVRLS
301: QAAVTTEDCM LEIVALVKER LATLDPVFAR AAQAMADWIK LWKAVGSGSG SSRPSNG

Best Arabidopsis Sequence Match ( AT5G16510.1 )
(BLAST)

001: MSLAEINKNE VDIVIGALNA DLTQFLTSWR PFFSGFHLIV VKDPELKEEL NIPEGFDVDV YSKTDMEKVV GASNSTMFSG YSCRYFGYLV SKKKYIVSID
101: DDCVPAKDPK GFLVDAVTQH VINLENPATP LFFNTLYDPY CEGADFVRGY PFSLRSGVPC AASCGLWLNL ADLDAPTQAL KTEKRNTAYV DAVMTVPAKA
201: MLPISGINIA FNRELVGPAL VPALRLAGEG KVRWETLEDV WCGMCLKHIS DHLGYGVKTG LPYVWRNERG DAVESLRKKW EGMKLMEKSV PFFDSLKLPE
301: TALKVEDCVI ELAKAVKEQL GSDDPAFTQA ADAMVKWVQL WNSVNSSA

Arabidopsis Description

RGP5Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q2T5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.