Factsheet for PGSC0003DMT400059506

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 4
golgi 2
extracellular 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g051200.1.1	Tomato	cytosol, unclear	97.13	97.13
VIT_04s0023g00110.t01	Wine grape	cytosol	73.85	71.99
AT5G16510.2	Thale cress	cytosol	69.83	69.83
Bra008616.1-P	Field mustard	cytosol	69.25	69.25
CDX69446	Canola	cytosol	69.25	69.25
CDY55583	Canola	cytosol	68.68	68.68
Bra023571.1-P	Field mustard	cytosol	20.4	66.98
CDX85502	Canola	cytosol	20.69	66.67
Bra006359.1-P	Field mustard	cytosol	18.97	62.86
EES11595	Sorghum	cytosol	61.21	61.21
Os04t0660400-01	Rice	cytosol, plasma membrane, plastid	60.92	61.1
CDX78695	Canola	cytosol	18.39	60.95
CDY38107	Canola	cytosol	27.01	60.26
TraesCS2D01G498900.1	Wheat	cytosol, golgi, unclear	59.2	59.2
TraesCS2B01G526700.1	Wheat	cytosol, golgi	58.91	58.91
TraesCS2A01G498600.1	Wheat	cytosol, unclear	58.62	58.62
HORVU2Hr1G111070.2	Barley	cytosol	58.33	58.33
KRH00886	Soybean	cytosol, peroxisome, plastid	71.55	58.31
KRH40343	Soybean	cytosol, extracellular, plastid	71.55	58.31
PGSC0003DMT400039494	Potato	cytosol	50.29	50.14
Zm00001d001979_P002	Maize	extracellular, vacuole	60.92	50.12
PGSC0003DMT400003478	Potato	cytosol	50.86	49.86
PGSC0003DMT400068326	Potato	cytosol	50.0	49.43
PGSC0003DMT400004878	Potato	cytosol, extracellular	49.71	47.66
PGSC0003DMT400063316	Potato	cytosol	49.71	47.4
PGSC0003DMT400072896	Potato	cytosol, mitochondrion	48.85	46.96
PGSC0003DMT400019802	Potato	cytosol	33.91	28.71

Protein Annotations

KEGG:00520+5.4.99.30	EntrezGene:102591845	MapMan:3.13.7.3	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005829	GO:GO:0005975
GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009628
GO:GO:0009651	GO:GO:0009987	GO:GO:0016866	GO:GO:0030244	UniProt:M1C4C1	PFAM:PF03214
EnsemblPlantsGene:PGSC0003DMG403023117	PGSC:PGSC0003DMG403023117	EnsemblPlants:PGSC0003DMT400059506	PANTHER:PTHR31682	PANTHER:PTHR31682:SF4	InterPro:RGP_fam
UniParc:UPI0002951B87	RefSeq:XP_006340504.1	:	:	:	:

Description

Alpha-1,4-glucan-protein synthase [UDP-forming] [Source:PGSC_GENE;Acc:PGSC0003DMG403023117]

Coordinates

chr4:+:45565544..45575169

Molecular Weight (calculated)

39003.2 Da

IEP (calculated)

5.530

GRAVY (calculated)

-0.023

Length

348 amino acids

Sequence
(BLAST)

001: MSQVSVRDDE VDIVIAAIEP DLTSFLEEWR AIFSRFHLII IKDPDVKGEL KIPGGFNYDT YTKADIQQII GPSNAATFSG YSCRYFGYLL SKKKYIISID
101: DDCIPAKDTK GIQVDAIAQH INNLLTPATP FFFNTLYDPF CKGADFVRGY PFSLRSGVSC ALSCGLWLNL ADLDAPTQAL KPELRNTRYV DAVLTVPARA
201: MMPLSGINIA FDRELVGPAL LPSFKLAKEG KFRWETVEDV WTGMCVKVVC DHLGYGLKTG LPYVWRKERG DAIESLKKEW EGVKLMEEVV PFFQSMKLTP
301: AAKTAEDCVI EIAAAVKEQL GRIDPVFTRA ADSMVEWVQL WKTVKTRT

Best Arabidopsis Sequence Match ( AT5G16510.1 )
(BLAST)

001: MSLAEINKNE VDIVIGALNA DLTQFLTSWR PFFSGFHLIV VKDPELKEEL NIPEGFDVDV YSKTDMEKVV GASNSTMFSG YSCRYFGYLV SKKKYIVSID
101: DDCVPAKDPK GFLVDAVTQH VINLENPATP LFFNTLYDPY CEGADFVRGY PFSLRSGVPC AASCGLWLNL ADLDAPTQAL KTEKRNTAYV DAVMTVPAKA
201: MLPISGINIA FNRELVGPAL VPALRLAGEG KVRWETLEDV WCGMCLKHIS DHLGYGVKTG LPYVWRNERG DAVESLRKKW EGMKLMEKSV PFFDSLKLPE
301: TALKVEDCVI ELAKAVKEQL GSDDPAFTQA ADAMVKWVQL WNSVNSSA

Arabidopsis Description

RGP5Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q2T5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.