Factsheet for PGSC0003DMT400072896

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

cytosol 4
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g012070.2.1	Tomato	extracellular	98.62	98.62
PGSC0003DMT400004878	Potato	cytosol, extracellular	92.54	92.29
EES03655	Sorghum	cytosol	85.08	87.25
Zm00001d033174_P001	Maize	plasma membrane	87.57	87.09
Zm00001d013751_P005	Maize	plastid	87.29	86.81
PGSC0003DMT400068326	Potato	cytosol	84.25	86.65
PGSC0003DMT400003478	Potato	cytosol	84.81	86.48
PGSC0003DMT400063316	Potato	cytosol	86.74	86.03
TraesCS4B01G144900.1	Wheat	cytosol, extracellular, golgi, unclear	87.29	85.87
HORVU3Hr1G073780.1	Barley	cytosol	84.25	85.67
TraesCS3B01G333100.1	Wheat	cytosol, golgi	84.25	85.67
TraesCS3D01G298600.1	Wheat	cytosol, unclear	83.98	85.63
Os03t0599800-01	Rice	extracellular	85.91	85.44
EER91258	Sorghum	cytosol	85.64	85.16
TraesCS4A01G166900.1	Wheat	cytosol	86.19	84.78
TraesCS3A01G303200.1	Wheat	cytosol, extracellular, golgi	83.7	84.64
HORVU4Hr1G038960.2	Barley	cytosol, plasma membrane	86.19	84.1
PGSC0003DMT400039494	Potato	cytosol	76.52	79.37
TraesCS4D01G151900.2	Wheat	cytosol, golgi	86.74	76.77
VIT_05s0020g03250.t01	Wine grape	cytosol	13.54	64.47
GSMUA_Achr2P13620_001	Banana	cytosol	35.08	59.91
PGSC0003DMT400059506	Potato	cytosol	46.96	48.85
PGSC0003DMT400019802	Potato	cytosol	51.38	45.26

Protein Annotations

KEGG:00520+5.4.99.30	EntrezGene:102589020	MapMan:3.13.7.3	ProteinID:AFW90628	ProteinID:AFW90628.1	ProteinID:AFX67042
ProteinID:AFX67042.1	EMBL:AJ223252	ProteinID:CAB64206	ProteinID:CAB64206.2	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005576	GO:GO:0005618	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005794	GO:GO:0005975	GO:GO:0006464	GO:GO:0006486	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009506	GO:GO:0009987	GO:GO:0016043	GO:GO:0016853	GO:GO:0016866
GO:GO:0019538	GO:GO:0030054	GO:GO:0030244	GO:GO:0030312	GO:GO:0052691	GO:GO:0071555
GO:GO:0071669	InterPro:IPR029044	EMBL:JX576272	EMBL:JX839760	UniProt:K7XKT7	RefSeq:NP_001275026.1
InterPro:Nucleotide-diphossugar_trans	PFAM:PF03214	EnsemblPlantsGene:PGSC0003DMG400028361	PGSC:PGSC0003DMG400028361	EnsemblPlants:PGSC0003DMT400072896	PIRSF:PIRSF016429
PANTHER:PTHR31682	PANTHER:PTHR31682:SF13	InterPro:RGP	InterPro:RGP_fam	SUPFAM:SSF53448	UniParc:UPI00029625E5

Description

Alpha-1,4-glucan-protein synthase [UDP-forming] 1 [Source:PGSC_GENE;Acc:PGSC0003DMG400028361]

Coordinates

chr5:+:703501..706000

Molecular Weight (calculated)

41148.6 Da

IEP (calculated)

6.395

GRAVY (calculated)

-0.253

Length

362 amino acids

Sequence
(BLAST)

001: MAAATPLLKD ELDIVIPTIR NLDFLEMWRP FFQPYHLIIV QDGDPSKIIK VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV SKKKYIYTID
101: DDCFVAKDPS GKDINALEQH IKNLLCPSTP HFFNTLYDPY RDGADFVRGY PFSMREGAPT AVSHGLWLNI PDYDAPTQLV KPHERNTRYV DAVMTIPKGT
201: LFPMCGMNLA FDRDLIGPAM YFGLMGDGQP IGRYDDMWAG WCTKVICDHL GLGIKTGLPY IWHSKASNPF VNLKKEYNGI FWQEEIIPFF QAATLPKECT
301: TVQQCYLELS KQVKKKLSSI DPYFTKLGEA MVTWIEAWDE LNPTGDNLAK LSIADGPAKT KK

Best Arabidopsis Sequence Match ( AT5G15650.1 )
(BLAST)

001: MVEPANTVGL PVNPTPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKKIH VPEGYDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSSP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRDLIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL SLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEEIIPFF
301: QNAKLSKEAV TVQQCYIELS KMVKEKLSSL DPYFDKLADA MVTWIEAWDE LNPPAASGKA

Arabidopsis Description

RGP2RGP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UG61]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.