Factsheet for GSMUA_Achr2P13620_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
golgi 2
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_05s0020g03250.t01	Wine grape	cytosol	22.64	63.16
Solyc04g005340.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	59.43	35.29
Zm00001d033174_P001	Maize	plasma membrane	60.38	35.16
Zm00001d013751_P005	Maize	plastid	60.38	35.16
Solyc05g012070.2.1	Tomato	extracellular	59.91	35.08
PGSC0003DMT400072896	Potato	cytosol, mitochondrion	59.91	35.08
TraesCS4B01G144900.1	Wheat	cytosol, extracellular, golgi, unclear	60.85	35.05
TraesCS4A01G166900.1	Wheat	cytosol	60.85	35.05
PGSC0003DMT400004878	Potato	cytosol, extracellular	59.91	34.99
Os03t0599800-01	Rice	extracellular	59.43	34.62
HORVU4Hr1G038960.2	Barley	cytosol, plasma membrane	60.38	34.5
EER91258	Sorghum	cytosol	58.96	34.34
EES03655	Sorghum	cytosol	55.19	33.14
GSMUA_Achr8P28120_001	Banana	cytosol	57.55	32.8
GSMUA_Achr7P00470_001	Banana	cytosol	52.83	32.56
TraesCS3D01G298600.1	Wheat	cytosol, unclear	54.25	32.39
HORVU3Hr1G073780.1	Barley	cytosol	54.25	32.3
TraesCS3B01G333100.1	Wheat	cytosol, golgi	54.25	32.3
TraesCS3A01G303200.1	Wheat	cytosol, extracellular, golgi	53.3	31.56
TraesCS4D01G151900.2	Wheat	cytosol, golgi	60.85	31.54
GSMUA_Achr10P...	Banana	cytosol	46.7	29.82
GSMUA_Achr4P14450_001	Banana	cytosol	44.34	28.57
GSMUA_AchrUn_...	Banana	cytosol	21.7	17.76
GSMUA_Achr4P32910_001	Banana	cytosol	22.17	17.41
GSMUA_Achr6P35020_001	Banana	cytosol	21.23	16.79
GSMUA_Achr4P23520_001	Banana	cytosol	20.75	16.3
GSMUA_Achr3P25300_001	Banana	cytosol	21.7	15.97
GSMUA_Achr2P13630_001	Banana	cytosol	0.47	0.72

Protein Annotations

EnsemblPlants:GSMUA_Achr2P13620_001	EnsemblPlants:GSMUA_Achr2T13620_001	EnsemblPlantsGene:GSMUA_Achr2G13620_001	GO:GO:0003674	GO:GO:0003824	GO:GO:0005975
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016866	GO:GO:0030244
InterPro:RGP_fam	KEGG:00520+5.4.99.30	PANTHER:PTHR31682	PANTHER:PTHR31682:SF13	PFAM:PF03214	SEG:seg
UniParc:UPI0002962C9C	UniProt:M0S7Q3	MapMan:3.13.7.3	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G13620_001]

Coordinates

chr2:+:15692686..15694337

Molecular Weight (calculated)

23991.3 Da

IEP (calculated)

8.347

GRAVY (calculated)

-0.163

Length

212 amino acids

Sequence
(BLAST)

001: MAKESSSVPS TPLLKAELDI VIPTIRNLDF LEMWRPFFQP YHLVIVQDGD PSKPIKVPEG FDYELYNRND INRILGPKAS CISFKDSTCR CFGYMISKKK
101: YIYTIDDDCF VVKDPSGKEI NALQQHIKNL LTLPLPTSST PCMIPIVKVQ TLFMDILSAS AKGLQQLSLM AFGSTYPTMM LPPSLSSRVR GTRGMSMQSS
201: QYQREHYFPC AE

Best Arabidopsis Sequence Match ( AT3G02230.1 )
(BLAST)

001: MVEPANTVGI PVNHIPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKTIA VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSTP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRELIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL GLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QSAKLTKEAV TVQQCYMELS KLVKEKLSPI DPYFDKLADA MVTWIEAWDE LNPPTKA

Arabidopsis Description

RGP1RGP1 [Source:UniProtKB/TrEMBL;Acc:A0A178VK37]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.