Factsheet for Zm00001d013751_P005

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
nucleus: 24677780
mitochondrion: 27297264
plasma membrane: 27341663

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033174_P001	Maize	plasma membrane	97.8	97.8
EER91258	Sorghum	cytosol	95.6	95.6
Os03t0599800-01	Rice	extracellular	92.31	92.31
TraesCS4B01G144900.1	Wheat	cytosol, extracellular, golgi, unclear	93.13	92.12
TraesCS4A01G166900.1	Wheat	cytosol	92.86	91.85
HORVU4Hr1G038960.2	Barley	cytosol, plasma membrane	92.58	90.84
Solyc04g005340.2.1	Tomato	cytosol, extracellular, nucleus, plastid, unclear	87.64	89.36
Solyc05g012070.2.1	Tomato	extracellular	87.91	88.4
PGSC0003DMT400004878	Potato	cytosol, extracellular	87.91	88.15
PGSC0003DMT400072896	Potato	cytosol, mitochondrion	86.81	87.29
Zm00001d022085_P001	Maize	cytosol, plastid	84.89	85.6
TraesCS4D01G151900.2	Wheat	cytosol, golgi	93.13	82.89
Zm00001d006820_P001	Maize	cytosol	78.3	77.66
VIT_05s0020g03250.t01	Wine grape	cytosol	13.46	64.47
GSMUA_Achr2P13620_001	Banana	cytosol	35.16	60.38
Zm00001d042881_P001	Maize	extracellular	9.07	48.53
Zm00001d012683_P001	Maize	cytosol, nucleus, peroxisome	44.51	48.21
Zm00001d014000_P001	Maize	plastid	34.07	42.03
Zm00001d001979_P002	Maize	extracellular, vacuole	44.51	38.3

Protein Annotations

KEGG:00520+5.4.99.30	EntrezGene:100274298	MapMan:3.13.7.3	ProteinID:AQK64294.1	ProteinID:AQK64295.1	UniProt:B4G039
EMBL:BT042727	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005576	GO:GO:0005618
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005794	GO:GO:0005975	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009506	GO:GO:0009987	GO:GO:0016043	GO:GO:0016853
GO:GO:0016866	GO:GO:0030054	GO:GO:0030244	GO:GO:0030312	GO:GO:0052691	GO:GO:0071555
GO:GO:0071669	InterPro:IPR029044	InterPro:Nucleotide-diphossugar_trans	PFAM:PF03214	PIRSF:PIRSF016429	PANTHER:PTHR31682
PANTHER:PTHR31682:SF13	InterPro:RGP	InterPro:RGP_fam	SUPFAM:SSF53448	UniParc:UPI00017B795F	EnsemblPlantsGene:Zm00001d013751
EnsemblPlants:Zm00001d013751_P005	EnsemblPlants:Zm00001d013751_T005	SEG:seg	:	:	:

Description

UDP-arabinopyranose mutase 3

Coordinates

chr5:+:19237278..19239953

Molecular Weight (calculated)

41256.7 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.265

Length

364 amino acids

Sequence
(BLAST)

001: MAGTVTVPGS SKPSTPLLKD ELDIVIPTIR NLDFLEMWRP FFQPYHLIIV QDGDPTKTIK VPEGFDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIYTID DDCFVAKDPS GKDINALEQH IKNLLSPSTP FFFNTLYDPY REGADFVRGY PFSLREGAHT AVSHGLWLNI PDYDAPTQLV KPKERNERYV
201: DAVMTIPKGT LFPMCGMNLA FDRDLIGPAM YFGLMGDGQP IGRYDDMWAG WCVKVICDHL SLGVKTGLPY IWHSKASNPF VNLKKEYKGI FWQEDIIPFF
301: QNVTIPKDCD TVQKCYIYLS GQVKEKLGKI DPYFAKLGDA MVTWIEAWDE LNPAGPAAGK DKAK

Best Arabidopsis Sequence Match ( AT5G15650.1 )
(BLAST)

001: MVEPANTVGL PVNPTPLLKD ELDIVIPTIR NLDFLEMWRP FLQPYHLIIV QDGDPSKKIH VPEGYDYELY NRNDINRILG PKASCISFKD SACRCFGYMV
101: SKKKYIFTID DDCFVAKDPS GKAVNALEQH IKNLLCPSSP FFFNTLYDPY REGADFVRGY PFSLREGVST AVSHGLWLNI PDYDAPTQLV KPKERNTRYV
201: DAVMTIPKGT LFPMCGMNLA FDRDLIGPAM YFGLMGDGQP IGRYDDMWAG WCIKVICDHL SLGVKTGLPY IYHSKASNPF VNLKKEYKGI FWQEEIIPFF
301: QNAKLSKEAV TVQQCYIELS KMVKEKLSSL DPYFDKLADA MVTWIEAWDE LNPPAASGKA

Arabidopsis Description

RGP2RGP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UG61]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.